PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4QFE
Asym. Unit
Info
Asym.Unit (854 KB)
Biol.Unit 1 (214 KB)
Biol.Unit 2 (212 KB)
Biol.Unit 3 (218 KB)
Biol.Unit 4 (216 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF AN ENOYL-COA HYDRATASE FROM MYCOBACTERIUM SMEGMATIS
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
20 May 14 (Deposition) - 04 Jun 14 (Release) - 04 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,D,F (1x)
Biol. Unit 2: B,E,H (1x)
Biol. Unit 3: C,J,K (1x)
Biol. Unit 4: G,I,L (1x)
Keywords
:
Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Hydratase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Dranow, T. E. Edwards, D. Lorimer
Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Smegmatis
To Be Published
[
close entry info
]
Hetero Components
(4, 42)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: ETHANOL (EOHa)
2b: ETHANOL (EOHb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
32
Ligand/Ion
1,2-ETHANEDIOL
2
EOH
2
Ligand/Ion
ETHANOL
3
NA
4
Ligand/Ion
SODIUM ION
4
PO4
4
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(42, 42)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:103 , ASP A:123 , THR A:125 , ALA B:187
BINDING SITE FOR RESIDUE EDO A 301
02
AC2
SOFTWARE
MET A:0 , SER A:2 , HOH A:526 , TYR H:170
BINDING SITE FOR RESIDUE EDO A 302
03
AC3
SOFTWARE
MET A:90 , LEU A:92 , TRP A:114 , ASP A:116 , ARG A:207 , HOH A:437 , HOH A:447
BINDING SITE FOR RESIDUE EDO A 303
04
AC4
SOFTWARE
GLU A:122 , VAL A:178 , VAL A:179 , PRO A:180 , HOH A:477 , HOH A:480
BINDING SITE FOR RESIDUE EDO A 304
05
AC5
SOFTWARE
GLY A:215 , HOH A:548 , GLY D:215 , GLY F:215 , HOH F:482
BINDING SITE FOR RESIDUE NA A 305
06
AC6
SOFTWARE
ARG B:147 , LEU B:148 , HOH B:488
BINDING SITE FOR RESIDUE EOH B 301
07
AC7
SOFTWARE
GLU B:218 , ASN B:219
BINDING SITE FOR RESIDUE EDO B 302
08
AC8
SOFTWARE
MET B:90 , LEU B:92 , TRP B:114 , ASP B:116 , ARG B:207
BINDING SITE FOR RESIDUE EDO B 303
09
AC9
SOFTWARE
ILE B:149 , GLY B:150 , HOH B:453 , ILE E:149 , ILE H:149 , GLY H:150
BINDING SITE FOR RESIDUE PO4 B 304
10
BC1
SOFTWARE
GLY B:215 , HOH B:460 , HOH B:519 , GLY E:215 , GLY H:215
BINDING SITE FOR RESIDUE NA B 305
11
BC2
SOFTWARE
LEU E:92 , VAL E:96 , TRP E:114 , ASP E:116 , ARG E:207 , HOH E:439 , HOH E:476
BINDING SITE FOR RESIDUE EDO E 301
12
BC3
SOFTWARE
ARG A:162 , GLU A:168 , TYR F:170
BINDING SITE FOR RESIDUE EDO F 301
13
BC4
SOFTWARE
VAL E:1 , GLU F:122 , VAL F:178
BINDING SITE FOR RESIDUE EDO F 302
14
BC5
SOFTWARE
TYR B:103 , VAL B:105 , PHE B:129 , TRP B:133 , GLN G:186 , GLU G:189 , HOH G:457
BINDING SITE FOR RESIDUE EDO G 301
15
BC6
SOFTWARE
PHE B:129 , ARG G:185 , HOH G:421 , HOH G:429
BINDING SITE FOR RESIDUE EDO G 302
16
BC7
SOFTWARE
MET G:90 , LEU G:92 , TRP G:114 , ASP G:116 , ARG G:207 , HOH G:475
BINDING SITE FOR RESIDUE EDO G 303
17
BC8
SOFTWARE
GLY G:215 , GLY I:215 , GLY L:215 , HOH L:403
BINDING SITE FOR RESIDUE NA G 304
18
BC9
SOFTWARE
ILE G:149 , GLY G:150 , HOH G:518 , ILE I:149 , GLY I:150 , ILE L:149 , GLY L:150
BINDING SITE FOR RESIDUE PO4 G 305
19
CC1
SOFTWARE
SER A:-1 , ARG E:162 , GLU E:168 , TYR H:170 , ARG H:177
BINDING SITE FOR RESIDUE PO4 H 301
20
CC2
SOFTWARE
PRO I:30 , HOH I:480
BINDING SITE FOR RESIDUE EOH I 301
21
CC3
SOFTWARE
ASN I:57 , ARG J:162 , GLU J:168 , TYR K:170
BINDING SITE FOR RESIDUE EDO I 302
22
CC4
SOFTWARE
MET I:90 , ASP I:91 , LEU I:92 , TRP I:114 , ASP I:116 , ARG I:207
BINDING SITE FOR RESIDUE EDO I 303
23
CC5
SOFTWARE
ARG G:177 , ARG I:162 , HOH I:441 , HOH I:509 , HOH I:521
BINDING SITE FOR RESIDUE EDO I 304
24
CC6
SOFTWARE
TYR I:170 , ARG I:177 , VAL I:178 , HOH I:511
BINDING SITE FOR RESIDUE EDO I 305
25
CC7
SOFTWARE
ARG I:144 , LEU I:148 , HOH I:405 , HOH I:411 , HOH I:524
BINDING SITE FOR RESIDUE EDO I 306
26
CC8
SOFTWARE
ARG I:20 , PRO I:21 , GLU I:22 , ALA I:23 , HOH I:462 , HOH I:467
BINDING SITE FOR RESIDUE EDO I 307
27
CC9
SOFTWARE
ARG J:24 , ALA J:62 , TYR J:103 , HOH J:414 , HOH J:515 , HOH J:516
BINDING SITE FOR RESIDUE EDO J 301
28
DC1
SOFTWARE
MET J:90 , LEU J:92 , TRP J:114 , ASP J:116 , ARG J:207 , HOH J:524 , HOH J:536
BINDING SITE FOR RESIDUE EDO J 302
29
DC2
SOFTWARE
GLU I:22 , ARG J:153 , GLU J:168 , ILE J:172 , HOH J:455 , TYR K:170 , ASN K:176 , HOH K:418
BINDING SITE FOR RESIDUE EDO J 303
30
DC3
SOFTWARE
HIS C:151 , LEU J:113 , ARG J:144 , LEU J:148 , HOH J:416 , HOH J:453 , HOH J:501
BINDING SITE FOR RESIDUE EDO J 304
31
DC4
SOFTWARE
VAL D:105 , PHE D:129 , ARG J:185 , GLN J:186 , GLU J:189 , HOH J:544
BINDING SITE FOR RESIDUE EDO J 305
32
DC5
SOFTWARE
ARG J:177 , LEU J:191 , HOH J:499
BINDING SITE FOR RESIDUE EDO J 306
33
DC6
SOFTWARE
GLY C:215 , HOH C:403 , GLY J:215 , HOH J:533 , GLY K:215
BINDING SITE FOR RESIDUE NA J 307
34
DC7
SOFTWARE
ARG C:162 , HOH C:404 , TYR J:170 , ARG J:177
BINDING SITE FOR RESIDUE EDO C 301
35
DC8
SOFTWARE
ILE C:149 , GLY C:150 , HOH C:427 , HOH C:493 , ILE J:149 , GLY J:150 , ILE K:149 , GLY K:150
BINDING SITE FOR RESIDUE EDO C 302
36
DC9
SOFTWARE
ILE A:149 , GLY A:150 , ILE D:149 , GLY D:150 , HOH D:401 , HOH D:504 , ILE F:149 , GLY F:150
BINDING SITE FOR RESIDUE PO4 D 301
37
EC1
SOFTWARE
TYR A:170 , ARG D:162 , GLU D:168 , HOH D:444 , HOH D:525
BINDING SITE FOR RESIDUE EDO D 302
38
EC2
SOFTWARE
GLU B:73 , ARG K:6 , GLU K:8 , ARG K:185
BINDING SITE FOR RESIDUE EDO K 301
39
EC3
SOFTWARE
LEU K:92 , VAL K:96 , TRP K:114 , ASP K:116 , ARG K:207 , HOH K:461 , HOH K:496
BINDING SITE FOR RESIDUE EDO K 302
40
EC4
SOFTWARE
HIS J:151 , LEU K:113 , ARG K:144 , LEU K:148 , HOH K:428 , HOH K:458 , HOH K:500
BINDING SITE FOR RESIDUE EDO K 303
41
EC5
SOFTWARE
LEU L:113 , ARG L:144 , TRP L:214 , HOH L:411 , HOH L:466
BINDING SITE FOR RESIDUE EDO L 301
42
EC6
SOFTWARE
MET L:90 , LEU L:92 , TRP L:114 , ASP L:116 , ARG L:207 , HOH L:435
BINDING SITE FOR RESIDUE EDO L 302
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (854 KB)
Header - Asym.Unit
Biol.Unit 1 (214 KB)
Header - Biol.Unit 1
Biol.Unit 2 (212 KB)
Header - Biol.Unit 2
Biol.Unit 3 (218 KB)
Header - Biol.Unit 3
Biol.Unit 4 (216 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4QFE
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help