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4QDH
Biol. Unit 2
Info
Asym.Unit (278 KB)
Biol.Unit 1 (138 KB)
Biol.Unit 2 (135 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF MOUSE TLR9
Authors
:
B. C. Collins, I. A. Wilson
Date
:
13 May 14 (Deposition) - 11 Jun 14 (Release) - 08 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Glycosylation, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Collins, I. A. Wilson
Crystal Structure Of The C-Terminal Domain Of Mouse Tlr9.
Proteins V. 82 2874 2014
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close entry info
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
SER A:87 , LYS A:112 , SER B:290
BINDING SITE FOR RESIDUE SO4 A 508
02
AC4
SOFTWARE
HIS A:164 , HOH A:607 , TYR B:244
BINDING SITE FOR RESIDUE SO4 A 509
03
AC5
SOFTWARE
SER B:172 , SER B:173 , NAG B:502
BINDING SITE FOR RESIDUE SO4 B 506
04
AC6
SOFTWARE
HIS B:117 , TRP B:118 , ASN B:147 , HOH B:618 , HOH B:652
BINDING SITE FOR RESIDUE SO4 B 507
05
AC7
SOFTWARE
SER A:290 , SER B:87 , LYS B:112
BINDING SITE FOR RESIDUE SO4 B 508
06
AC8
SOFTWARE
TYR A:244 , HIS B:164 , GLY B:187 , HOH B:614
BINDING SITE FOR RESIDUE SO4 B 509
07
BC5
SOFTWARE
GLN B:90 , ALA B:91 , ASN B:93 , GLN B:96 , HOH B:609
BINDING SITE FOR MONO-SACCHARIDE NAG B 501 BOUND TO ASN B 93
08
BC6
SOFTWARE
TRP B:118 , ASN B:147 , SER B:149 , SO4 B:506
BINDING SITE FOR MONO-SACCHARIDE NAG B 502 BOUND TO ASN B 147
09
BC7
SOFTWARE
PRO B:225 , ASN B:249 , ASN B:274
BINDING SITE FOR MONO-SACCHARIDE NAG B 503 BOUND TO ASN B 249
10
BC8
SOFTWARE
PHE B:247 , ASN B:274
BINDING SITE FOR MONO-SACCHARIDE NAG B 504 BOUND TO ASN B 274
11
BC9
SOFTWARE
SER B:289 , SER B:290 , ASN B:311 , HIS B:314 , TRP B:360 , HOH B:617
BINDING SITE FOR MONO-SACCHARIDE NAG B 505 BOUND TO ASN B 311
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (278 KB)
Header - Asym.Unit
Biol.Unit 1 (138 KB)
Header - Biol.Unit 1
Biol.Unit 2 (135 KB)
Header - Biol.Unit 2
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