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4Q7R
Asym. Unit
Info
Asym.Unit (178 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (85 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LARGE STOKES SHIFT FLUORESCENT PROTEIN LSSMORANGE
Authors
:
S. Pletnev, Z. Dauter
Date
:
25 Apr 14 (Deposition) - 09 Jul 14 (Release) - 09 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta-Barrel, Large Stokes Shift Fluorescent Protein, Chromophore, Fluorescent Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Pletnev, D. M. Shcherbakova, O. M. Subach, N. V. Pletneva, V. N. Malashkevich, S. C. Almo, Z. Dauter, V. V. Verkhusha
Orange Fluorescent Proteins: Structural Studies Of Lssmorange, Psmorange And Psmorange2.
Plos One V. 9 99136 2014
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Hetero Components
(3, 28)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
2a: [(4Z)-2-{(2R,5R)-2-[(1S)-1-AMINO-2... (OFMa)
2b: [(4Z)-2-{(2R,5R)-2-[(1S)-1-AMINO-2... (OFMb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
3m: ZINC ION (ZNm)
3n: ZINC ION (ZNn)
3o: ZINC ION (ZNo)
3p: ZINC ION (ZNp)
3q: ZINC ION (ZNq)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
9
Ligand/Ion
ACETATE ION
2
OFM
2
Mod. Amino Acid
[(4Z)-2-{(2R,5R)-2-[(1S)-1-AMINO-2-PHENYLETHYL]-2-HYDROXY-5-METHYL-2,5-DIHYDRO-1,3-OXAZOL-4-YL}-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID
3
ZN
17
Ligand/Ion
ZINC ION
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:10 , HOH A:478 , GLU B:206 , HOH B:474
BINDING SITE FOR RESIDUE ZN A 301
02
AC2
SOFTWARE
HIS A:204 , TYR A:208 , ACT A:313 , HOH A:479 , GLU B:39
BINDING SITE FOR RESIDUE ZN A 302
03
AC3
SOFTWARE
GLU A:206 , HOH A:480 , GLU B:10 , HOH B:476
BINDING SITE FOR RESIDUE ZN A 303
04
AC4
SOFTWARE
ASP A:227 , ACT A:315 , HOH A:481 , HOH A:482 , HIS B:25
BINDING SITE FOR RESIDUE ZN A 304
05
AC5
SOFTWARE
ASP A:78 , HIS A:221 , ACT A:314
BINDING SITE FOR RESIDUE ZN A 305
06
AC6
SOFTWARE
GLU A:34 , ACT A:311 , GLU B:212 , ACT B:308
BINDING SITE FOR RESIDUE ZN A 306
07
AC7
SOFTWARE
GLU A:212 , ACT A:312 , GLU B:34 , ACT B:309
BINDING SITE FOR RESIDUE ZN A 307
08
AC8
SOFTWARE
GLU A:26 , HIS A:172 , HOH A:518
BINDING SITE FOR RESIDUE ZN A 308
09
AC9
SOFTWARE
GLU A:144 , HIS A:172
BINDING SITE FOR RESIDUE ZN A 309
10
BC1
SOFTWARE
HIS A:25 , HOH A:546 , HOH A:547 , HOH A:556
BINDING SITE FOR RESIDUE ZN A 310
11
BC2
SOFTWARE
ARG A:13 , GLU A:34 , ZN A:306 , HOH A:423 , HOH A:483 , LYS B:45 , SER B:203 , GLU B:212 , ACT B:308
BINDING SITE FOR RESIDUE ACT A 311
12
BC3
SOFTWARE
LYS A:45 , GLU A:212 , ZN A:307 , ACT A:316 , GLU B:34 , ARG B:164 , ZN B:306 , ACT B:309 , ACT B:310
BINDING SITE FOR RESIDUE ACT A 312
13
BC4
SOFTWARE
HIS A:204 , TYR A:208 , ZN A:302 , GLU B:39 , HOH B:427
BINDING SITE FOR RESIDUE ACT A 313
14
BC5
SOFTWARE
PRO A:76 , ASP A:78 , HIS A:221 , ZN A:305 , HOH A:460
BINDING SITE FOR RESIDUE ACT A 314
15
BC6
SOFTWARE
GLU A:228 , LYS A:231 , ZN A:304 , HOH A:481 , HOH A:482 , HIS B:25
BINDING SITE FOR RESIDUE ACT A 315
16
BC7
SOFTWARE
ACT A:312 , HOH A:515 , HOH A:552 , ARG B:164 , ZN B:306 , ACT B:308
BINDING SITE FOR RESIDUE ACT A 316
17
BC8
SOFTWARE
GLU A:32 , GLU B:144 , HIS B:172 , HOH B:472
BINDING SITE FOR RESIDUE ZN B 301
18
BC9
SOFTWARE
GLU A:39 , HOH A:477 , HIS B:204 , TYR B:208 , HOH B:473
BINDING SITE FOR RESIDUE ZN B 302
19
CC1
SOFTWARE
ASP B:78 , HIS B:221 , HOH B:477
BINDING SITE FOR RESIDUE ZN B 303
20
CC2
SOFTWARE
ASP B:115 , GLU B:153 , HOH B:478
BINDING SITE FOR RESIDUE ZN B 304
21
CC3
SOFTWARE
LYS B:15 , GLU B:117 , GLU B:160 , HOH B:479 , HOH B:500
BINDING SITE FOR RESIDUE ZN B 305
22
CC4
SOFTWARE
ACT A:312 , ACT A:316 , ACT B:308 , ACT B:310
BINDING SITE FOR RESIDUE ZN B 306
23
CC5
SOFTWARE
ASP B:154 , HOH B:522
BINDING SITE FOR RESIDUE ZN B 307
24
CC6
SOFTWARE
GLU A:34 , ZN A:306 , ACT A:311 , ACT A:316 , LYS B:45 , GLU B:212 , ZN B:306 , ACT B:310
BINDING SITE FOR RESIDUE ACT B 308
25
CC7
SOFTWARE
LYS A:45 , SER A:203 , ILE A:210 , GLU A:212 , ZN A:307 , ACT A:312 , HOH A:493 , ARG B:13 , GLU B:34 , HOH B:533
BINDING SITE FOR RESIDUE ACT B 309
26
CC8
SOFTWARE
ACT A:312 , GLU B:32 , LYS B:162 , ZN B:306 , ACT B:308
BINDING SITE FOR RESIDUE ACT B 310
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (178 KB)
Header - Asym.Unit
Biol.Unit 1 (89 KB)
Header - Biol.Unit 1
Biol.Unit 2 (85 KB)
Header - Biol.Unit 2
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