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4Q6Y
Asym. Unit
Info
Asym.Unit (146 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A CHEMOENZYMATIC GLYCOENGINEERED DISIALYLATED FC (DI-SFC)
Authors
:
A. A. Ahmed, J. Giddens, A. Pincetic, J. V. Lomino, J. V. Ravetch, L. X. Wa P. J. Bjorkman
Date
:
23 Apr 14 (Deposition) - 23 Jul 14 (Release) - 03 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Ahmed, J. Giddens, A. Pincetic, J. V. Lomino, J. V. Ravetch, L. X. Wang, P. J. Bjorkman
Structural Characterization Of Anti-Inflammatory Immunoglobulin G Fc Proteins.
J. Mol. Biol. V. 426 3166 2014
[
close entry info
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Hetero Components
(5, 33)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5a: O-SIALIC ACID (SIAa)
5b: O-SIALIC ACID (SIAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
3
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SIA
2
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:265 , GLN A:295 , ASN A:297 , NAG A:502 , MAN B:508
BINDING SITE FOR RESIDUE NAG A 501
02
AC2
SOFTWARE
PHE A:241 , VAL A:264 , NAG A:501 , BMA A:503 , MAN A:504 , MAN B:508
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
PHE A:243 , NAG A:502 , MAN A:504 , MAN A:506
BINDING SITE FOR RESIDUE BMA A 503
04
AC4
SOFTWARE
NAG A:502 , BMA A:503 , NAG A:505
BINDING SITE FOR RESIDUE MAN A 504
05
AC5
SOFTWARE
MAN A:504
BINDING SITE FOR RESIDUE NAG A 505
06
AC6
SOFTWARE
BMA A:503 , NAG A:507 , BMA B:503
BINDING SITE FOR RESIDUE MAN A 506
07
AC7
SOFTWARE
MAN A:506
BINDING SITE FOR RESIDUE NAG A 507
08
AC8
SOFTWARE
ASP B:265 , GLN B:295 , ASN B:297 , THR B:299 , NAG B:502
BINDING SITE FOR RESIDUE NAG B 501
09
AC9
SOFTWARE
PHE B:241 , ARG B:301 , NAG B:501 , BMA B:503 , MAN B:504
BINDING SITE FOR RESIDUE NAG B 502
10
BC1
SOFTWARE
MAN A:506 , PHE B:241 , PHE B:243 , NAG B:502 , MAN B:504 , MAN B:508
BINDING SITE FOR RESIDUE BMA B 503
11
BC2
SOFTWARE
NAG B:502 , BMA B:503 , NAG B:505
BINDING SITE FOR RESIDUE MAN B 504
12
BC3
SOFTWARE
THR B:260 , MAN B:504 , GAL B:506
BINDING SITE FOR RESIDUE NAG B 505
13
BC4
SOFTWARE
PRO B:244 , LYS B:246 , ASP B:249 , GLU B:258 , THR B:260 , NAG B:505 , SIA B:507
BINDING SITE FOR RESIDUE GAL B 506
14
BC5
SOFTWARE
GAL B:506
BINDING SITE FOR RESIDUE SIA B 507
15
BC6
SOFTWARE
NAG A:501 , NAG A:502 , BMA B:503 , NAG B:509
BINDING SITE FOR RESIDUE MAN B 508
16
BC7
SOFTWARE
MAN B:508
BINDING SITE FOR RESIDUE NAG B 509
17
BC8
SOFTWARE
ASN C:297 , THR C:299 , NAG C:502
BINDING SITE FOR RESIDUE NAG C 501
18
BC9
SOFTWARE
PHE C:241 , PHE C:243 , NAG C:502 , MAN C:504 , MAN C:507
BINDING SITE FOR RESIDUE BMA C 503
19
CC1
SOFTWARE
NAG C:502 , BMA C:503 , NAG C:505
BINDING SITE FOR RESIDUE MAN C 504
20
CC2
SOFTWARE
PHE C:243 , THR C:260 , MAN C:504 , GAL C:506
BINDING SITE FOR RESIDUE NAG C 505
21
CC3
SOFTWARE
PHE C:243 , PRO C:244 , GLU C:258 , THR C:260 , NAG C:505 , SIA C:509
BINDING SITE FOR RESIDUE GAL C 506
22
CC4
SOFTWARE
PHE C:241 , NAG C:501 , BMA C:503 , MAN C:504
BINDING SITE FOR RESIDUE NAG C 502
23
CC5
SOFTWARE
BMA C:503 , NAG C:508
BINDING SITE FOR RESIDUE MAN C 507
24
CC6
SOFTWARE
MAN C:507
BINDING SITE FOR RESIDUE NAG C 508
25
CC7
SOFTWARE
GAL C:506
BINDING SITE FOR RESIDUE SIA C 509
26
CC8
SOFTWARE
ASN D:297 , NAG D:502
BINDING SITE FOR RESIDUE NAG D 501
27
CC9
SOFTWARE
NAG D:501 , BMA D:503 , MAN D:506
BINDING SITE FOR RESIDUE NAG D 502
28
DC1
SOFTWARE
PHE D:243 , NAG D:502 , MAN D:504 , MAN D:506
BINDING SITE FOR RESIDUE BMA D 503
29
DC2
SOFTWARE
PHE D:241 , BMA D:503 , NAG D:505
BINDING SITE FOR RESIDUE MAN D 504
30
DC3
SOFTWARE
PHE D:241 , MAN D:504
BINDING SITE FOR RESIDUE NAG D 505
31
DC4
SOFTWARE
NAG D:502 , BMA D:503 , NAG D:507
BINDING SITE FOR RESIDUE MAN D 506
32
DC5
SOFTWARE
LYS D:246 , THR D:260 , MAN D:506 , GAL D:508
BINDING SITE FOR RESIDUE NAG D 507
33
DC6
SOFTWARE
ASP D:249 , GLU D:258 , THR D:260 , NAG D:507
BINDING SITE FOR RESIDUE GAL D 508
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (146 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (69 KB)
Header - Biol.Unit 2
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