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4Q1Q
Biol. Unit 2
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Asym.Unit (114 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TIBC-CATALYZED HYPER-GLYCOSYLATED TIBA55-350 FRAGMENT
Authors
:
Q. Yao, Q. Lu, F. Shao
Date
:
04 Apr 14 (Deposition) - 17 Sep 14 (Release) - 29 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.11
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta-Helix, Adhesion, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Lu, Q. Yao, Y. Xu, L. Li, S. Li, Y. Liu, W. Gao, M. Niu, M. Sharon, G. Ben-Nissan, A. Zamyatina, X. Liu, S. Chen, F. Shao
An Iron-Containing Dodecameric Heptosyltransferase Family Modifies Bacterial Autotransporters In Pathogenesis
Cell Host Microbe V. 16 351 2014
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 39)
Info
All Hetero Components
1a: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289a)
1aa: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289aa)
1ab: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ab)
1ac: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ac)
1ad: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ad)
1ae: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ae)
1af: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289af)
1ag: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ag)
1ah: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ah)
1ai: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ai)
1aj: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289aj)
1ak: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ak)
1al: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289al)
1am: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289am)
1an: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289an)
1ao: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ao)
1ap: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ap)
1aq: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289aq)
1ar: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ar)
1as: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289as)
1at: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289at)
1au: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289au)
1av: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289av)
1aw: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289aw)
1ax: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ax)
1ay: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ay)
1az: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289az)
1b: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289b)
1ba: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289ba)
1bb: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bb)
1bc: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bc)
1bd: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bd)
1be: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289be)
1bf: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bf)
1bg: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bg)
1bh: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bh)
1bi: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bi)
1bj: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bj)
1bk: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bk)
1bl: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bl)
1bm: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bm)
1bn: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bn)
1bo: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bo)
1bp: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bp)
1bq: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289bq)
1br: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289br)
1c: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289c)
1d: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289d)
1e: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289e)
1f: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289f)
1g: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289g)
1h: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289h)
1i: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289i)
1j: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289j)
1k: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289k)
1l: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289l)
1m: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289m)
1n: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289n)
1o: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289o)
1p: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289p)
1q: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289q)
1r: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289r)
1s: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289s)
1t: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289t)
1u: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289u)
1v: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289v)
1w: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289w)
1x: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289x)
1y: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289y)
1z: D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRAN... (289z)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
289
35
Ligand/Ion
D-GLYCERO-ALPHA-D-MANNO-HEPTOPYRANOSE
2
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(44, 44)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC8 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC8 (SOFTWARE)
06: CC2 (SOFTWARE)
07: CC8 (SOFTWARE)
08: CC9 (SOFTWARE)
09: DC2 (SOFTWARE)
10: DC9 (SOFTWARE)
11: EC1 (SOFTWARE)
12: EC2 (SOFTWARE)
13: EC3 (SOFTWARE)
14: EC4 (SOFTWARE)
15: EC5 (SOFTWARE)
16: EC6 (SOFTWARE)
17: EC7 (SOFTWARE)
18: EC8 (SOFTWARE)
19: EC9 (SOFTWARE)
20: FC1 (SOFTWARE)
21: FC2 (SOFTWARE)
22: FC3 (SOFTWARE)
23: FC4 (SOFTWARE)
24: FC5 (SOFTWARE)
25: FC6 (SOFTWARE)
26: FC7 (SOFTWARE)
27: FC8 (SOFTWARE)
28: FC9 (SOFTWARE)
29: GC1 (SOFTWARE)
30: GC2 (SOFTWARE)
31: GC3 (SOFTWARE)
32: GC4 (SOFTWARE)
33: GC5 (SOFTWARE)
34: GC6 (SOFTWARE)
35: GC7 (SOFTWARE)
36: GC8 (SOFTWARE)
37: GC9 (SOFTWARE)
38: HC1 (SOFTWARE)
39: HC2 (SOFTWARE)
40: HC3 (SOFTWARE)
41: HC4 (SOFTWARE)
42: HC5 (SOFTWARE)
43: HC6 (SOFTWARE)
44: HC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
SER A:86 , GLY A:87 , 289 B:409
BINDING SITE FOR RESIDUE 289 A 403
02
AC6
SOFTWARE
SER A:113 , 289 A:404 , 289 A:408 , 289 B:431
BINDING SITE FOR RESIDUE 289 A 406
03
AC8
SOFTWARE
SER A:132 , 289 A:406 , 289 A:409 , 289 B:430 , 289 B:431
BINDING SITE FOR RESIDUE 289 A 408
04
AC9
SOFTWARE
SER A:151 , SER A:170 , 289 A:408 , 289 B:430 , 289 B:431
BINDING SITE FOR RESIDUE 289 A 409
05
BC8
SOFTWARE
SER A:248 , ALA A:249 , THR A:250 , SER A:267 , THR A:269 , 289 B:424
BINDING SITE FOR RESIDUE 289 A 417
06
CC2
SOFTWARE
ILE A:105 , SER A:124 , ASN A:143 , 289 B:416
BINDING SITE FOR RESIDUE 289 A 420
07
CC8
SOFTWARE
SER A:294 , 289 A:425 , 289 A:427 , 289 B:422
BINDING SITE FOR RESIDUE 289 A 426
08
CC9
SOFTWARE
SER A:313 , 289 A:426 , 289 B:421 , 289 B:422
BINDING SITE FOR RESIDUE 289 A 427
09
DC2
SOFTWARE
MSE A:156 , SER A:176 , ASN B:59 , THR B:61
BINDING SITE FOR RESIDUE 289 A 429
10
DC9
SOFTWARE
HIS B:72 , SER B:74 , 289 B:402
BINDING SITE FOR RESIDUE 289 B 401
11
EC1
SOFTWARE
HIS B:72 , SER B:93 , 289 B:401 , 289 B:405
BINDING SITE FOR RESIDUE 289 B 402
12
EC2
SOFTWARE
ARG B:64 , SER B:86 , TYR B:255
BINDING SITE FOR RESIDUE 289 B 403
13
EC3
SOFTWARE
ALA B:75 , SER B:94 , 289 B:406
BINDING SITE FOR RESIDUE 289 B 404
14
EC4
SOFTWARE
TYR B:91 , SER B:112 , 289 B:402 , 289 B:407
BINDING SITE FOR RESIDUE 289 B 405
15
EC5
SOFTWARE
SER B:113 , 289 B:404 , 289 B:408
BINDING SITE FOR RESIDUE 289 B 406
16
EC6
SOFTWARE
HIS B:110 , HIS B:129 , SER B:131 , 289 B:405 , HOH B:548
BINDING SITE FOR RESIDUE 289 B 407
17
EC7
SOFTWARE
SER B:132 , 289 B:406 , 289 B:409
BINDING SITE FOR RESIDUE 289 B 408
18
EC8
SOFTWARE
289 A:403 , SER B:151 , 289 B:408
BINDING SITE FOR RESIDUE 289 B 409
19
EC9
SOFTWARE
SER B:154 , ALA B:155 , MSE B:156 , SER B:173 , ALA B:174 , THR B:175 , LYS B:194
BINDING SITE FOR RESIDUE 289 B 410
20
FC1
SOFTWARE
ILE B:169 , SER B:170 , 289 B:412
BINDING SITE FOR RESIDUE 289 B 411
21
FC2
SOFTWARE
ILE B:169 , SER B:188 , ARG B:207 , 289 B:411 , 289 B:413
BINDING SITE FOR RESIDUE 289 B 412
22
FC3
SOFTWARE
SER B:189 , ASP B:208 , 289 B:412
BINDING SITE FOR RESIDUE 289 B 413
23
FC4
SOFTWARE
ARG B:207 , SER B:226 , TYR B:245 , HOH B:546
BINDING SITE FOR RESIDUE 289 B 414
24
FC5
SOFTWARE
SER B:227 , TYR B:245 , SER B:264 , 289 B:419
BINDING SITE FOR RESIDUE 289 B 415
25
FC6
SOFTWARE
289 A:420 , SER B:230 , 289 B:417
BINDING SITE FOR RESIDUE 289 B 416
26
FC7
SOFTWARE
ARG A:184 , SER B:248 , ALA B:249 , THR B:269 , 289 B:416
BINDING SITE FOR RESIDUE 289 B 417
27
FC8
SOFTWARE
TYR B:245 , SER B:263 , SER B:264 , TYR B:282 , HOH B:519 , HOH B:534
BINDING SITE FOR RESIDUE 289 B 418
28
FC9
SOFTWARE
SER B:264 , ASP B:284 , 289 B:415
BINDING SITE FOR RESIDUE 289 B 419
29
GC1
SOFTWARE
SER B:124 , TYR B:274 , SER B:275 , THR B:293 , SER B:294 , 289 B:425 , 289 B:426 , HOH B:531
BINDING SITE FOR RESIDUE 289 B 420
30
GC2
SOFTWARE
289 A:427 , ASN B:143 , SER B:162 , 289 B:422 , 289 B:426 , 289 B:427
BINDING SITE FOR RESIDUE 289 B 421
31
GC3
SOFTWARE
289 A:426 , 289 A:427 , SER B:162 , SER B:181 , 289 B:421 , 289 B:423
BINDING SITE FOR RESIDUE 289 B 422
32
GC4
SOFTWARE
SER B:200 , ASN B:219 , THR B:220 , 289 B:422
BINDING SITE FOR RESIDUE 289 B 423
33
GC5
SOFTWARE
THR A:269 , ASN A:270 , GLU A:289 , 289 A:417 , ASN B:219 , SER B:238 , HOH B:515
BINDING SITE FOR RESIDUE 289 B 424
34
GC6
SOFTWARE
ASN A:270 , THR A:272 , ILE A:310 , ASN B:256 , SER B:275 , 289 B:420 , 289 B:426
BINDING SITE FOR RESIDUE 289 B 425
35
GC7
SOFTWARE
ASN B:143 , SER B:275 , SER B:294 , 289 B:420 , 289 B:421 , 289 B:425 , 289 B:427 , HOH B:531
BINDING SITE FOR RESIDUE 289 B 426
36
GC8
SOFTWARE
ASN B:143 , GLY B:163 , ARG B:203 , SER B:313 , 289 B:421 , 289 B:426 , HOH B:511 , HOH B:531
BINDING SITE FOR RESIDUE 289 B 427
37
GC9
SOFTWARE
SER B:322 , HOH B:541 , HOH B:549
BINDING SITE FOR RESIDUE 289 B 428
38
HC1
SOFTWARE
SER B:176
BINDING SITE FOR RESIDUE 289 B 429
39
HC2
SOFTWARE
289 A:408 , 289 A:409 , ASN B:81 , SER B:100 , 289 B:431
BINDING SITE FOR RESIDUE 289 B 430
40
HC3
SOFTWARE
289 A:406 , 289 A:408 , 289 A:409 , SER B:119 , ASN B:138 , 289 B:430
BINDING SITE FOR RESIDUE 289 B 431
41
HC4
SOFTWARE
SER B:97 , THR B:99 , SER B:116 , THR B:118 , 289 B:433
BINDING SITE FOR RESIDUE 289 B 432
42
HC5
SOFTWARE
GLY B:114 , SER B:116 , SER B:135 , THR B:137 , 289 B:432 , 289 B:434
BINDING SITE FOR RESIDUE 289 B 433
43
HC6
SOFTWARE
SER B:135 , THR B:137 , SER B:154 , 289 B:433
BINDING SITE FOR RESIDUE 289 B 434
44
HC7
SOFTWARE
ASN B:286 , SER B:305 , ALA B:306 , ALA B:323 , SER B:326
BINDING SITE FOR RESIDUE 289 B 435
[
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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