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4Q17
Biol. Unit 1
Info
Asym.Unit (222 KB)
Biol.Unit 1 (614 KB)
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(1)
Title
:
FREE FORM OF TVNIR, MIDDLE DOSE DATA SET
Authors
:
V. A. Lazarenko, K. M. Polyakov, A. A. Trofimov, A. N. Popov, T. V. Tikhon A. V. Tikhonov, V. O. Popov
Date
:
03 Apr 14 (Deposition) - 10 Sep 14 (Release) - 10 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. A. Lazarenko, K. M. Polyakov, A. A. Trofimov, A. N. Popov, T. V. Tikhonova, A. V. Tikhonov, V. O. Popov
X-Ray-Induced Changes In The Active Site Structure Of Octaheme Cytochrome C Nitrite Reductase And Its Substrate Complexes
To Be Published
[
close entry info
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Hetero Components
(4, 60)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: CITRIC ACID (CITa)
3a: GLYCEROL (GOLa)
4a: HEME C (HECa)
4b: HEME C (HECb)
4c: HEME C (HECc)
4d: HEME C (HECd)
4e: HEME C (HECe)
4f: HEME C (HECf)
4g: HEME C (HECg)
4h: HEME C (HECh)
4i: HEME C (HECi)
4j: HEME C (HECj)
4k: HEME C (HECk)
4l: HEME C (HECl)
4m: HEME C (HECm)
4n: HEME C (HECn)
4o: HEME C (HECo)
4p: HEME C (HECp)
5a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CIT
3
Ligand/Ion
CITRIC ACID
3
GOL
3
Ligand/Ion
GLYCEROL
4
HEC
48
Ligand/Ion
HEME C
5
MPD
6
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:113 , ALA A:114 , ASP A:125 , HIS A:126 , VAL A:129 , ARG A:131 , CYS A:184 , CYS A:187 , LYS A:188 , ARG A:242 , CYS A:299 , HIS A:300 , TYR A:303 , CYS A:305 , HIS A:361 , ASN A:486 , HEC A:603 , HOH A:701 , HOH A:704 , HOH A:736 , HOH A:918 , HOH A:923
BINDING SITE FOR RESIDUE HEC A 601
02
AC2
SOFTWARE
CYS A:66 , HIS A:70 , GLN A:73 , LEU A:225 , CYS A:227 , CYS A:230 , HIS A:231 , ALA A:290 , MET A:384 , TYR A:395 , THR A:396 , HIS A:398 , HEC A:603 , HEC A:607 , HOH A:901 , HOH A:970 , HOH A:983 , HOH A:1266
BINDING SITE FOR RESIDUE HEC A 602
03
AC3
SOFTWARE
SER A:84 , PRO A:116 , ARG A:117 , HIS A:119 , PHE A:121 , MET A:122 , ASP A:125 , CYS A:187 , LYS A:188 , LEU A:225 , MET A:229 , CYS A:296 , CYS A:299 , HIS A:300 , HIS A:383 , MET A:384 , HEC A:601 , HEC A:602 , HEC A:604 , HOH A:706 , HOH A:843 , HOH A:916 , HOH A:1014
BINDING SITE FOR RESIDUE HEC A 603
04
AC4
SOFTWARE
HIS A:300 , PHE A:367 , HIS A:372 , VAL A:377 , ALA A:378 , CYS A:379 , CYS A:382 , HIS A:383 , THR A:402 , ARG A:404 , ILE A:427 , LYS A:431 , ASN A:486 , PHE A:490 , HIS A:491 , HEC A:603 , HEC A:605 , HOH A:737 , HOH A:781 , HOH A:793 , HOH A:916 , HOH A:924 , HOH A:1014
BINDING SITE FOR RESIDUE HEC A 604
05
AC5
SOFTWARE
ASN A:141 , TRP A:142 , GLN A:143 , VAL A:371 , HIS A:372 , ASN A:375 , PRO A:403 , ALA A:410 , CYS A:411 , CYS A:414 , HIS A:415 , TRP A:418 , ILE A:427 , PHE A:490 , HEC A:604 , HOH A:1055
BINDING SITE FOR RESIDUE HEC A 605
06
AC6
SOFTWARE
CYS A:14 , PHE A:15 , HIS A:18 , ILE A:21 , HIS A:25 , VAL A:33 , ASN A:34 , CYS A:35 , CYS A:38 , HIS A:39 , THR A:59 , ILE A:193 , LEU A:194 , PHE A:228 , PRO A:233 , HIS A:234 , ARG A:239 , PHE A:274 , ARG A:276 , ARG A:282 , HEC A:607 , HEC A:608 , HOH A:881 , HOH A:1019 , HOH A:1200
BINDING SITE FOR RESIDUE HEC A 606
07
AC7
SOFTWARE
LYS A:29 , HIS A:30 , HIS A:37 , ALA A:65 , CYS A:66 , THR A:68 , CYS A:69 , HIS A:70 , CYS A:227 , HIS A:231 , ALA A:236 , HEC A:602 , HEC A:606 , HOH A:780 , HOH A:1109 , HOH A:1177 , HOH A:1239 , THR B:68
BINDING SITE FOR RESIDUE HEC A 607
08
AC8
SOFTWARE
GLN A:13 , CYS A:14 , CYS A:17 , HIS A:18 , HIS A:39 , HIS A:44 , VAL A:45 , ALA A:48 , SER A:49 , SER A:50 , ARG A:52 , MET A:53 , ARG A:56 , PRO A:57 , THR A:59 , LEU A:194 , ARG A:276 , GLY A:277 , HEC A:606 , HOH A:824 , HOH A:883 , HOH A:899 , HOH A:1096 , HOH A:1192
BINDING SITE FOR RESIDUE HEC A 608
09
AC9
SOFTWARE
GLU A:302 , TYR A:303 , LYS A:358 , GLN A:360 , HOH A:760 , HOH A:972
BINDING SITE FOR RESIDUE CA A 609
10
BC1
SOFTWARE
ARG A:87 , VAL A:128 , GLN A:138 , PHE A:139 , TRP A:142 , TYR A:433 , ARG A:497 , HOH A:1126
BINDING SITE FOR RESIDUE MPD A 610
11
BC2
SOFTWARE
HIS B:113 , ALA B:114 , ASP B:125 , HIS B:126 , VAL B:129 , ARG B:131 , CYS B:184 , CYS B:187 , LYS B:188 , ARG B:242 , CYS B:299 , HIS B:300 , TYR B:303 , CYS B:305 , HIS B:361 , ASN B:486 , HEC B:603 , HOH B:701 , HOH B:742 , HOH B:788 , HOH B:879 , HOH B:960
BINDING SITE FOR RESIDUE HEC B 601
12
BC3
SOFTWARE
CYS B:66 , HIS B:70 , GLN B:73 , LEU B:225 , CYS B:227 , CYS B:230 , HIS B:231 , ALA B:290 , MET B:295 , MET B:384 , TYR B:395 , THR B:396 , HIS B:398 , HEC B:607 , HOH B:764 , HOH B:940 , HOH B:1031
BINDING SITE FOR RESIDUE HEC B 602
13
BC4
SOFTWARE
SER B:84 , PRO B:116 , ARG B:117 , HIS B:119 , PHE B:121 , MET B:122 , ASP B:125 , CYS B:187 , LEU B:225 , MET B:229 , CYS B:296 , CYS B:299 , HIS B:300 , HIS B:383 , MET B:384 , HEC B:601 , HEC B:604 , HOH B:871 , HOH B:884 , HOH B:958 , HOH B:1062
BINDING SITE FOR RESIDUE HEC B 603
14
BC5
SOFTWARE
CYS B:296 , HIS B:300 , PHE B:367 , HIS B:372 , VAL B:377 , ALA B:378 , CYS B:379 , CYS B:382 , HIS B:383 , THR B:402 , PRO B:403 , ARG B:404 , LYS B:431 , ASN B:486 , PHE B:490 , HIS B:491 , HEC B:603 , HEC B:605 , HOH B:958 , HOH B:963 , HOH B:966 , HOH B:1062 , HOH B:1071 , HOH B:1117
BINDING SITE FOR RESIDUE HEC B 604
15
BC6
SOFTWARE
ASN B:141 , TRP B:142 , GLN B:143 , VAL B:371 , HIS B:372 , ASN B:375 , PRO B:403 , ALA B:410 , CYS B:411 , CYS B:414 , HIS B:415 , TRP B:418 , ILE B:427 , PHE B:490 , HEC B:604 , HOH B:1102
BINDING SITE FOR RESIDUE HEC B 605
16
BC7
SOFTWARE
CYS B:14 , PHE B:15 , HIS B:18 , HIS B:25 , VAL B:33 , ASN B:34 , CYS B:35 , CYS B:38 , HIS B:39 , LEU B:194 , PHE B:228 , PRO B:233 , HIS B:234 , ARG B:239 , PHE B:274 , ARG B:276 , ARG B:282 , HEC B:607 , HEC B:608 , HOH B:727 , HOH B:920
BINDING SITE FOR RESIDUE HEC B 606
17
BC8
SOFTWARE
HIS A:37 , THR A:68 , LYS B:29 , HIS B:30 , HIS B:37 , ALA B:65 , CYS B:66 , CYS B:69 , HIS B:70 , CYS B:227 , HIS B:231 , ALA B:236 , HEC B:602 , HEC B:606 , HOH B:786 , HOH B:853 , HOH B:1070 , HOH B:1201 , HOH B:1288
BINDING SITE FOR RESIDUE HEC B 607
18
BC9
SOFTWARE
GLN B:13 , CYS B:14 , CYS B:17 , HIS B:18 , HIS B:39 , ALA B:41 , HIS B:44 , VAL B:45 , ALA B:48 , SER B:49 , SER B:50 , ARG B:51 , ARG B:52 , MET B:53 , ARG B:56 , PRO B:57 , THR B:59 , LEU B:194 , GLN B:275 , ARG B:276 , HEC B:606 , HOH B:727 , HOH B:922 , HOH B:938 , HOH B:1146 , HOH B:1237 , HOH B:1238
BINDING SITE FOR RESIDUE HEC B 608
19
CC1
SOFTWARE
GLU B:302 , TYR B:303 , LYS B:358 , GLN B:360 , HOH B:765 , HOH B:766
BINDING SITE FOR RESIDUE CA B 609
20
CC2
SOFTWARE
ARG B:87 , GLN B:138 , PHE B:139 , TRP B:142 , TYR B:433 , ARG B:497 , HOH B:710
BINDING SITE FOR RESIDUE MPD B 610
21
CC3
SOFTWARE
TYR B:198 , LYS B:271 , THR B:273 , HOH B:828 , HOH B:843
BINDING SITE FOR RESIDUE GOL B 611
22
CC4
SOFTWARE
SER B:49 , SER B:50 , ARG B:51 , HOH B:1279
BINDING SITE FOR RESIDUE CIT B 612
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
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Info
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Sorry, no Info available
[
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