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4PR6
Asym. Unit
Info
Asym.Unit (88 KB)
Biol.Unit 1 (83 KB)
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(1)
Title
:
A SECOND LOOK AT THE HDV RIBOZYME STRUCTURE AND DYNAMICS.
Authors
:
G. J. Kapral, S. Jain, J. Noeske, J. A. Doudna, D. C. Richardson, J. S. Ric
Date
:
05 Mar 14 (Deposition) - 29 Oct 14 (Release) - 26 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Base Sequence, Binding Sites, Catalysis, Cloning, Molecular, Computer Graphics, Escherichia Coli, Hepatitis Delta Virus, Models, Molecular Sequence Data, Nucleic Acid Conformation, Rna, Catalytic, Viral, Rna-Binding Proteins, Ribonucleoprotein, U1 Small Nuclear, Rna Binding Protein/Rna, Rna Binding Protein-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. J. Kapral, S. Jain, J. Noeske, J. A. Doudna, D. C. Richardson, J. S. Richardson
New Tools Provide A Second Look At Hdv Ribozyme Structure, Dynamics And Cleavage.
Nucleic Acids Res. V. 42 12833 2014
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
16
Ligand/Ion
MAGNESIUM ION
2
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G B:169 , G B:170
BINDING SITE FOR RESIDUE MG B 402
02
AC2
SOFTWARE
C B:152 , A B:153 , HOH B:501
BINDING SITE FOR RESIDUE MG B 403
03
AC3
SOFTWARE
G B:138 , HOH B:509
BINDING SITE FOR RESIDUE MG B 404
04
AC4
SOFTWARE
G B:117 , C B:118
BINDING SITE FOR RESIDUE MG B 406
05
AC5
SOFTWARE
C B:119
BINDING SITE FOR RESIDUE MG B 407
06
AC6
SOFTWARE
G B:110
BINDING SITE FOR RESIDUE MG B 408
07
AC7
SOFTWARE
G B:135 , C B:136
BINDING SITE FOR RESIDUE MG B 409
08
AC8
SOFTWARE
U B:123 , C B:124
BINDING SITE FOR RESIDUE MG B 410
09
AC9
SOFTWARE
C B:107
BINDING SITE FOR RESIDUE MG B 411
10
BC1
SOFTWARE
C B:107 , A B:108
BINDING SITE FOR RESIDUE MG B 412
11
BC2
SOFTWARE
A B:116
BINDING SITE FOR RESIDUE MG B 413
12
BC3
SOFTWARE
LYS A:23 , LYS A:27
BINDING SITE FOR RESIDUE MG A 101
13
BC4
SOFTWARE
SER A:48 , LEU A:49 , LYS A:50 , MSE A:51
BINDING SITE FOR RESIDUE MG A 102
14
BC5
SOFTWARE
ASP A:24
BINDING SITE FOR RESIDUE MG A 103
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0 ; only for superseded entry 1CX0: 1,1)
Info
All SCOP Domains
1a: SCOP_d1cx0a_ ()
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CATH Domains
(0, 0 ; only for superseded entry 1CX0: 1,1)
Info
all CATH domains
1a: CATH_1cx0A00 ()
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Pfam Domains
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Chain A
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Asymmetric Unit 1
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