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4PQU
Biol. Unit 1
Info
Asym.Unit (371 KB)
Biol.Unit 1 (186 KB)
Biol.Unit 2 (184 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH RNA/DNA AND DATP
Authors
:
K. Das, R. P. Bandwar, E. Arnold
Date
:
04 Mar 14 (Deposition) - 18 Jun 14 (Release) - 16 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.51
Chains
:
Asym. Unit : A,B,C,D,E,F,P,T
Biol. Unit 1: A,B,P,T (1x)
Biol. Unit 2: C,D,E,F (1x)
Keywords
:
Fingers, Palm, Thumb, Connection, Rnase H, Nucleotidyltransferase, Dna-Directed Dna Polymerase, Rna-Directed Dna Polymerase, Transferase, Hydrolase-Dna-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Das, S. E. Martinez, R. P. Bandwar, E. Arnold
Structures Of Hiv-1 Rt-Rna/Dna Ternary Complexes With Datp And Nevirapine Reveal Conformational Flexibility Of Rna/Dna Insights Into Requirements For Rnase H Cleavage.
Nucleic Acids Res. V. 42 8125 2014
(for further references see the
PDB file header
)
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPa)
1b: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPb)
2a: 1,2-ETHANEDIOL (EDOa)
3a: GLYCEROL (GOLa)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DTP
1
Ligand/Ion
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
1
Ligand/Ion
GLYCEROL
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:65 , ARG A:72 , LEU A:74 , ASP A:110 , VAL A:111 , GLY A:112 , ASP A:113 , ALA A:114 , TYR A:115 , GLN A:151 , ASP A:185 , LYS A:219 , MG A:602 , MG A:603 , HOH A:779 , DG P:822 , U T:705 , C T:706
BINDING SITE FOR RESIDUE DTP A 601
02
AC2
SOFTWARE
ASP A:110 , VAL A:111 , ASP A:185 , DTP A:601 , MG A:603
BINDING SITE FOR RESIDUE MG A 602
03
AC3
SOFTWARE
ASP A:110 , ASP A:185 , ASP A:186 , DTP A:601 , MG A:602 , HOH A:779 , DG P:822
BINDING SITE FOR RESIDUE MG A 603
04
AC4
SOFTWARE
ALA A:408 , THR A:409 , HOH A:797 , HOH A:802 , GLN B:394 , THR B:397
BINDING SITE FOR RESIDUE EDO A 604
05
AC5
SOFTWARE
LYS A:101 , LYS A:102 , LYS A:103 , VAL A:106 , TYR A:188 , PRO A:236 , TYR A:318
BINDING SITE FOR RESIDUE SO4 A 605
06
AC6
SOFTWARE
LYS A:331 , GLY A:333 , GLN A:334
BINDING SITE FOR RESIDUE SO4 A 606
07
AC7
SOFTWARE
TYR A:427 , GLN A:428 , LYS A:528 , GLU A:529
BINDING SITE FOR RESIDUE SO4 A 607
08
AC8
SOFTWARE
TRP B:24 , GLU B:399 , TRP B:402 , HOH B:716
BINDING SITE FOR RESIDUE SO4 B 501
09
AC9
SOFTWARE
ILE A:380 , PRO B:25 , THR B:400 , GLU B:404 , HOH B:681
BINDING SITE FOR RESIDUE GOL B 502
10
BC1
SOFTWARE
TRP B:266 , PRO B:420 , PRO B:421 , LEU B:422 , VAL B:423
BINDING SITE FOR RESIDUE SO4 B 503
11
BC6
SOFTWARE
LYS A:311 , ARG D:277 , GLN D:278 , LYS D:281
BINDING SITE FOR RESIDUE SO4 D 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (371 KB)
Header - Asym.Unit
Biol.Unit 1 (186 KB)
Header - Biol.Unit 1
Biol.Unit 2 (184 KB)
Header - Biol.Unit 2
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