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4POV
Biol. Unit 2
Info
Asym.Unit (135 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
THIT WITH LMG135 BOUND
Authors
:
L. J. Y. M. Swier, A. Guskov, D. J. Slotboom
Date
:
26 Feb 14 (Deposition) - 17 Sep 14 (Release) - 01 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
S-Component, Thiamine-Binding Protein, Ecf Module, Membrane, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Swier, L. Monjas, A. Guskov, A. R. De Voogd, G. B. Erkens, D. J. Slotboom, A. K. Hirsch
Structure-Based Design Of Potent Small-Molecule Binders To The S-Component Of The Ecf Transporter For Thiamine.
Chembiochem V. 16 819 2015
[
close entry info
]
Hetero Components
(6, 16)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
2a: 4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL... (2VYa)
2b: 4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL... (2VYb)
3a: B-NONYLGLUCOSIDE (BNGa)
3b: B-NONYLGLUCOSIDE (BNGb)
3c: B-NONYLGLUCOSIDE (BNGc)
3d: B-NONYLGLUCOSIDE (BNGd)
3e: B-NONYLGLUCOSIDE (BNGe)
3f: B-NONYLGLUCOSIDE (BNGf)
4a: CHLORIDE ION (CLa)
5a: HEXAETHYLENE GLYCOL (P6Ga)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
6c: DI(HYDROXYETHYL)ETHER (PEGc)
6d: DI(HYDROXYETHYL)ETHER (PEGd)
6e: DI(HYDROXYETHYL)ETHER (PEGe)
6f: DI(HYDROXYETHYL)ETHER (PEGf)
6g: DI(HYDROXYETHYL)ETHER (PEGg)
6h: DI(HYDROXYETHYL)ETHER (PEGh)
6i: DI(HYDROXYETHYL)ETHER (PEGi)
6j: DI(HYDROXYETHYL)ETHER (PEGj)
7a: 2-(2-METHOXYETHOXY)ETHANOL (PG0a)
7b: 2-(2-METHOXYETHOXY)ETHANOL (PG0b)
8a: TETRAETHYLENE GLYCOL (PG4a)
8b: TETRAETHYLENE GLYCOL (PG4b)
8c: TETRAETHYLENE GLYCOL (PG4c)
8d: TETRAETHYLENE GLYCOL (PG4d)
8e: TETRAETHYLENE GLYCOL (PG4e)
8f: TETRAETHYLENE GLYCOL (PG4f)
8g: TETRAETHYLENE GLYCOL (PG4g)
8h: TETRAETHYLENE GLYCOL (PG4h)
8i: TETRAETHYLENE GLYCOL (PG4i)
9a: TRIETHYLENE GLYCOL (PGEa)
9b: TRIETHYLENE GLYCOL (PGEb)
9c: TRIETHYLENE GLYCOL (PGEc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
2
Ligand/Ion
PENTAETHYLENE GLYCOL
2
2VY
1
Ligand/Ion
4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHENE-2-CARBALDEHYDE
3
BNG
3
Ligand/Ion
B-NONYLGLUCOSIDE
4
CL
-1
Ligand/Ion
CHLORIDE ION
5
P6G
-1
Ligand/Ion
HEXAETHYLENE GLYCOL
6
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
PG0
1
Ligand/Ion
2-(2-METHOXYETHOXY)ETHANOL
8
PG4
4
Ligand/Ion
TETRAETHYLENE GLYCOL
9
PGE
-1
Ligand/Ion
TRIETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: BC5 (SOFTWARE)
04: BC6 (SOFTWARE)
05: BC7 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC2 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
11: CC6 (SOFTWARE)
12: CC7 (SOFTWARE)
13: CC8 (SOFTWARE)
14: CC9 (SOFTWARE)
15: DC1 (SOFTWARE)
16: DC2 (SOFTWARE)
17: DC3 (SOFTWARE)
18: DC4 (SOFTWARE)
19: DC5 (SOFTWARE)
20: DC6 (SOFTWARE)
21: DC7 (SOFTWARE)
22: DC8 (SOFTWARE)
23: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
THR A:30 , VAL A:37 , PG4 B:206
BINDING SITE FOR RESIDUE PG4 A 204
02
AC5
SOFTWARE
1PE A:216 , PG4 B:204
BINDING SITE FOR RESIDUE PG4 A 206
03
BC5
SOFTWARE
LYS A:106 , LEU A:107 , ALA A:108 , HOH A:326 , VAL B:31 , TYR B:32
BINDING SITE FOR RESIDUE PEG A 215
04
BC6
SOFTWARE
LEU A:148 , PG4 A:206 , PG4 B:204
BINDING SITE FOR RESIDUE 1PE A 216
05
BC7
SOFTWARE
PRO A:109 , LEU A:112 , PGE A:219 , TYR B:32
BINDING SITE FOR RESIDUE PGE A 217
06
BC9
SOFTWARE
LEU A:97 , PHE A:98 , ARG A:99 , PGE A:217 , 1PE B:215
BINDING SITE FOR RESIDUE PGE A 219
07
CC2
SOFTWARE
TRP B:34 , GLU B:84 , TYR B:85 , HIS B:125 , GLY B:129 , TRP B:133 , TYR B:146 , ASN B:151 , HOH B:313 , HOH B:316
BINDING SITE FOR RESIDUE 2VY B 201
08
CC3
SOFTWARE
THR B:30 , GLY B:33 , TRP B:34 , ILE B:36 , TYR B:74 , HOH B:305
BINDING SITE FOR RESIDUE PG0 B 202
09
CC4
SOFTWARE
LEU B:10 , ALA B:55 , HOH B:311
BINDING SITE FOR RESIDUE PG4 B 203
10
CC5
SOFTWARE
PG4 A:206 , 1PE A:216 , LEU B:119
BINDING SITE FOR RESIDUE PG4 B 204
11
CC6
SOFTWARE
MET B:68 , ILE B:69 , PEG B:213
BINDING SITE FOR RESIDUE PG4 B 205
12
CC7
SOFTWARE
VAL A:31 , PG4 A:204 , BNG B:209
BINDING SITE FOR RESIDUE PG4 B 206
13
CC8
SOFTWARE
ALA B:15 , ALA B:19 , PHE B:22 , ILE B:69
BINDING SITE FOR RESIDUE BNG B 207
14
CC9
SOFTWARE
LEU B:97 , PHE B:98 , ARG B:99 , PRO B:109 , VAL B:116 , BNG B:209
BINDING SITE FOR RESIDUE BNG B 208
15
DC1
SOFTWARE
PHE B:98 , ALA B:108 , LEU B:112 , PG4 B:206 , BNG B:208
BINDING SITE FOR RESIDUE BNG B 209
16
DC2
SOFTWARE
ILE B:160
BINDING SITE FOR RESIDUE PEG B 210
17
DC3
SOFTWARE
ILE A:153 , LEU B:112 , PHE B:115 , PEG B:212
BINDING SITE FOR RESIDUE PEG B 211
18
DC4
SOFTWARE
PEG B:211
BINDING SITE FOR RESIDUE PEG B 212
19
DC5
SOFTWARE
MET B:68 , LEU B:78 , LEU B:86 , PG4 B:205
BINDING SITE FOR RESIDUE PEG B 213
20
DC6
SOFTWARE
PHE B:173 , PRO B:174 , LYS B:175
BINDING SITE FOR RESIDUE PEG B 214
21
DC7
SOFTWARE
PGE A:219 , LYS B:139 , GLY B:140 , TRP B:141 , ALA B:145
BINDING SITE FOR RESIDUE 1PE B 215
22
DC8
SOFTWARE
THR B:30 , ILE B:165
BINDING SITE FOR RESIDUE 1PE B 216
23
DC9
SOFTWARE
TRP B:34 , TYR B:146
BINDING SITE FOR RESIDUE CL B 217
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (135 KB)
Header - Asym.Unit
Biol.Unit 1 (67 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
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