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4PNW
Asym. Unit
Info
Asym.Unit (135 KB)
Biol.Unit 1 (129 KB)
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Title
:
E. COLI SLIDING CLAMP IN COMPLEX WITH (R)-6-BROMO-9-(2-((S)-1-CARBOXY-2-PHENYLETHYLAMINO)-2-OXOETHYL)-2,3,4,9-TETRAHYDRO-1H-CARBAZOLE-2-CARBOXYLIC ACID
Authors
:
Z. Yin, A. J. Oakley
Date
:
21 Feb 14 (Deposition) - 05 Mar 14 (Release) - 24 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Poliii Beta, Sliding Clamp, Dnan, Transferase, Transferase- Transferase Inhibitor Complex
(Keyword Search:
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Reference
:
Z. Yin, L. R. Whittell, Y. Wang, S. Jergic, C. Ma, P. J. Lewis, N. E. Dixon J. L. Beck, M. J. Kelso, A. J. Oakley
Bacterial Sliding Clamp Inhibitors That Mimic The Sequentia Binding Mechanism Of Endogenous Linear Motifs.
J. Med. Chem. V. 58 4693 2015
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: (2R)-6-BROMO-9-(2-{[(1S)-1-CARBOXY... (2VMa)
1b: (2R)-6-BROMO-9-(2-{[(1S)-1-CARBOXY... (2VMb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: CHLORIDE ION (CLa)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
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No.
Name
Count
Type
Full Name
1
2VM
2
Ligand/Ion
(2R)-6-BROMO-9-(2-{[(1S)-1-CARBOXY-2-PHENYLETHYL]AMINO}-2-OXOETHYL)-2,3,4,9-TETRAHYDRO-1H-CARBAZOLE-2-CARBOXYLIC ACID
2
CA
4
Ligand/Ion
CALCIUM ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:152 , TYR A:154 , THR A:172 , GLY A:174 , HIS A:175 , ARG A:176 , PRO A:242 , VAL A:247 , MET A:362 , HOH A:790
BINDING SITE FOR RESIDUE 2VM A 401
02
AC2
SOFTWARE
ASN A:118 , LEU A:119 , HOH A:525 , HOH A:555 , HOH A:557 , HOH A:599 , HOH B:559
BINDING SITE FOR RESIDUE CA A 402
03
AC3
SOFTWARE
SER A:181 , SER A:356
BINDING SITE FOR RESIDUE CA A 403
04
AC4
SOFTWARE
LEU B:262 , ALA B:266 , ARG B:269 , HOH B:532 , HOH B:616
BINDING SITE FOR RESIDUE CL B 401
05
AC5
SOFTWARE
TYR B:153 , TYR B:154 , THR B:172 , ASP B:173 , GLY B:174 , HIS B:175 , ARG B:176 , MET B:362 , HOH B:790
BINDING SITE FOR RESIDUE 2VM B 402
06
AC6
SOFTWARE
ASN B:118 , LEU B:119 , HOH B:535 , HOH B:553 , HOH B:582 , HOH B:627 , HOH B:644
BINDING SITE FOR RESIDUE CA B 403
07
AC7
SOFTWARE
SER B:181 , SER B:356
BINDING SITE FOR RESIDUE CA B 404
08
AC8
SOFTWARE
ARG B:7 , ARG B:80 , LEU B:82 , GLU B:84
BINDING SITE FOR RESIDUE PEG B 405
09
AC9
SOFTWARE
GLU A:303 , TYR B:284 , SER B:286 , GLN B:289 , LYS B:291
BINDING SITE FOR RESIDUE PEG B 406
10
BC1
SOFTWARE
LYS B:2 , VAL B:90 , GLN B:91 , GLU B:93 , LEU B:98 , ARG B:100 , ALA B:313 , GLU B:314 , HOH B:623 , HOH B:762
BINDING SITE FOR RESIDUE PEG B 407
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4pnwa1 (A:1-122)
1b: SCOP_d4pnwa2 (A:123-244)
1c: SCOP_d4pnwa3 (A:245-364)
1d: SCOP_d4pnwb1 (B:1-122)
1e: SCOP_d4pnwb2 (B:123-244)
1f: SCOP_d4pnwb3 (B:245-364)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase III, beta subunit
(31)
Protein domain
:
DNA polymerase III, beta subunit
(31)
Escherichia coli [TaxId: 562]
(30)
1a
d4pnwa1
A:1-122
1b
d4pnwa2
A:123-244
1c
d4pnwa3
A:245-364
1d
d4pnwb1
B:1-122
1e
d4pnwb2
B:123-244
1f
d4pnwb3
B:245-364
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (135 KB)
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