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4PNV
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (137 KB)
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(1)
Title
:
E. COLI SLIDING CLAMP APO-CRYSTAL IN P21 SPACE GROUP WITH LARGER CELL DIMENSIONS
Authors
:
Z. Yin, A. J. Oakley
Date
:
21 Feb 14 (Deposition) - 05 Mar 14 (Release) - 24 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Poliii Beta, Sliding Clamp, Dnan, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Yin, L. R. Whittell, Y. Wang, S. Jergic, C. Ma, P. J. Lewis, N. E. Dixon J. L. Beck, M. J. Kelso, A. J. Oakley
Bacterial Sliding Clamp Inhibitors That Mimic The Sequentia Binding Mechanism Of Endogenous Linear Motifs.
J. Med. Chem. V. 58 4693 2015
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
CL
4
Ligand/Ion
CHLORIDE ION
3
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:118 , LEU A:119 , HOH A:520 , HOH A:542 , HOH A:543 , HOH A:581 , HOH A:643
BINDING SITE FOR RESIDUE CA A 401
02
AC2
SOFTWARE
GLU A:6 , HIS A:9 , GLN A:61 , HOH A:579 , HOH A:891
BINDING SITE FOR RESIDUE CL A 402
03
AC3
SOFTWARE
ARG A:103 , ARG A:105 , GLU B:303 , ILE B:305
BINDING SITE FOR RESIDUE CA A 403
04
AC4
SOFTWARE
VAL A:17 , SER A:18 , LEU A:30 , GLY A:31 , GLY A:46 , MET A:53 , ALA A:72 , HOH A:922
BINDING SITE FOR RESIDUE PEG A 404
05
AC5
SOFTWARE
TYR A:153 , VAL A:237 , HOH A:515 , HOH A:746
BINDING SITE FOR RESIDUE CA A 405
06
AC6
SOFTWARE
HIS A:255 , SER A:311 , GLY A:312 , HOH A:745 , HOH A:889 , HOH A:893
BINDING SITE FOR RESIDUE CA A 406
07
AC7
SOFTWARE
LEU A:14 , SER A:18 , LEU A:33 , HOH A:725
BINDING SITE FOR RESIDUE CA A 407
08
AC8
SOFTWARE
ASN B:118 , LEU B:119 , HOH B:520 , HOH B:522 , HOH B:557 , HOH B:596 , HOH B:661
BINDING SITE FOR RESIDUE CA B 401
09
AC9
SOFTWARE
GLU A:125 , HOH A:871 , MET B:1 , PRO B:65 , GLY B:66 , ALA B:67 , LEU B:92 , HOH B:727 , HOH B:923
BINDING SITE FOR RESIDUE PEG B 402
10
BC1
SOFTWARE
GLN A:123 , HOH A:516 , HOH A:695 , GLN B:36 , ALA B:38 , THR B:41 , LEU B:42 , SER B:43
BINDING SITE FOR RESIDUE PEG B 403
11
BC2
SOFTWARE
THR B:4 , VAL B:5 , LEU B:59 , VAL B:60 , GLN B:61 , HOH B:503 , HOH B:642
BINDING SITE FOR RESIDUE CA B 404
12
BC3
SOFTWARE
THR B:110 , LEU B:111 , PRO B:112 , HOH B:507 , HOH B:911
BINDING SITE FOR RESIDUE CA B 405
13
BC4
SOFTWARE
HOH A:561 , HOH A:781 , GLN B:265 , ARG B:269 , HOH B:517
BINDING SITE FOR RESIDUE CL B 406
14
BC5
SOFTWARE
ARG B:105 , SER B:286 , GLU B:287 , HOH B:595 , HOH B:786
BINDING SITE FOR RESIDUE CL B 407
15
BC6
SOFTWARE
GLN B:16 , ARG B:205 , PHE B:230 , HOH B:706 , HOH B:958
BINDING SITE FOR RESIDUE CL B 408
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4pnva1 (A:1-122)
1b: SCOP_d4pnva2 (A:123-244)
1c: SCOP_d4pnva3 (A:245-366)
1d: SCOP_d4pnvb1 (B:1-122)
1e: SCOP_d4pnvb2 (B:123-244)
1f: SCOP_d4pnvb3 (B:245-366)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase III, beta subunit
(31)
Protein domain
:
DNA polymerase III, beta subunit
(31)
Escherichia coli [TaxId: 562]
(30)
1a
d4pnva1
A:1-122
1b
d4pnva2
A:123-244
1c
d4pnva3
A:245-366
1d
d4pnvb1
B:1-122
1e
d4pnvb2
B:123-244
1f
d4pnvb3
B:245-366
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (142 KB)
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