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4PJT
Asym. Unit
Info
Asym.Unit (443 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (110 KB)
Biol.Unit 3 (116 KB)
Biol.Unit 4 (109 KB)
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(1)
Title
:
STRUCTURE OF PARP1 CATALYTIC DOMAIN BOUND TO INHIBITOR BMN 673
Authors
:
M. Aoyagi-Scharber, A. S. Gardberg, T. L. Arakaki
Date
:
12 May 14 (Deposition) - 24 Sep 14 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Parp1, Inhibitor, Complex, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Aoyagi-Scharber, A. S. Gardberg, B. K. Yip, B. Wang, Y. Shen, P. A. Fitzpatrick
Structural Basis For The Inhibition Of Poly(Adp-Ribose) Polymerases 1 And 2 By Bmn 673, A Potent Inhibitor Derived From Dihydropyridophthalazinone.
Acta Crystallogr. , Sect. F V. 70 1143 2014
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: (8S,9R)-5-FLUORO-8-(4-FLUOROPHENYL... (2YQa)
1b: (8S,9R)-5-FLUORO-8-(4-FLUOROPHENYL... (2YQb)
1c: (8S,9R)-5-FLUORO-8-(4-FLUOROPHENYL... (2YQc)
1d: (8S,9R)-5-FLUORO-8-(4-FLUOROPHENYL... (2YQd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
View:
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Label:
No.
Name
Count
Type
Full Name
1
2YQ
4
Ligand/Ion
(8S,9R)-5-FLUORO-8-(4-FLUOROPHENYL)-9-(1-METHYL-1H-1,2,4-TRIAZOL-5-YL)-2,7,8,9-TETRAHYDRO-3H-PYRIDO[4,3,2-DE]PHTHALAZIN-3-ONE
2
GOL
3
Ligand/Ion
GLYCEROL
3
SO4
15
Ligand/Ion
SULFATE ION
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:903 , LEU A:984 , LEU A:985 , TYR A:986
binding site for residue SO4 A 1101
02
AC2
SOFTWARE
ARG A:858 , MET A:929 , LYS A:949
binding site for residue SO4 A 1102
03
AC3
SOFTWARE
ARG A:841 , GLY A:843 , CYS A:845 , GLN A:846 , GLY B:843 , GLU B:844 , CYS B:845 , GLN B:846
binding site for residue SO4 A 1103
04
AC4
SOFTWARE
SER A:808 , GLU A:809 , GLU A:810 , HOH A:1286 , HIS C:937
binding site for residue SO4 A 1104
05
AC5
SOFTWARE
GLN A:759 , GLU A:763 , HIS A:862 , GLY A:863 , GLY A:888 , TYR A:889 , TYR A:896 , PHE A:897 , ALA A:898 , LYS A:903 , SER A:904 , TYR A:907 , GLU A:988 , HOH A:1220 , HOH A:1231 , HOH A:1272
binding site for residue 2YQ A 1105
06
AC6
SOFTWARE
LYS A:933 , HIS A:934 , ALA A:935 , SER A:936
binding site for residue GOL A 1106
07
AC7
SOFTWARE
GLY A:944 , HIS A:946 , PRO D:850 , LEU D:854 , HIS D:946
binding site for residue GOL A 1107
08
AC8
SOFTWARE
LYS B:903 , LEU B:984 , LEU B:985 , TYR B:986
binding site for residue SO4 B 1101
09
AC9
SOFTWARE
GLN A:846 , LYS A:849 , LYS B:838 , ASP B:965 , LYS B:1000 , HOH B:1241
binding site for residue SO4 B 1102
10
AD1
SOFTWARE
ARG B:858 , MET B:929 , LYS B:949
binding site for residue SO4 B 1103
11
AD2
SOFTWARE
LYS B:943 , GLY B:944 , HIS B:946 , SO4 B:1106 , HOH B:1234 , HIS C:946
binding site for residue SO4 B 1104
12
AD3
SOFTWARE
HIS B:862 , GLY B:863 , GLY B:888 , TYR B:889 , TYR B:896 , PHE B:897 , ALA B:898 , LYS B:903 , SER B:904 , TYR B:907 , GLU B:988 , HOH B:1221 , HOH B:1224
binding site for residue 2YQ B 1105
13
AD4
SOFTWARE
LYS B:945 , HIS B:946 , GLN B:996 , SO4 B:1104 , HOH B:1213
binding site for residue SO4 B 1106
14
AD5
SOFTWARE
LYS C:903 , LEU C:985 , TYR C:986 , GOL C:1105 , HOH C:1266
binding site for residue SO4 C 1101
15
AD6
SOFTWARE
LYS C:838 , LYS C:1000 , GLN D:846 , LYS D:849
binding site for residue SO4 C 1102
16
AD7
SOFTWARE
SER C:702 , LYS C:703 , ARG C:704
binding site for residue SO4 C 1103
17
AD8
SOFTWARE
GLN C:759 , HIS C:862 , GLY C:863 , GLY C:888 , TYR C:889 , TYR C:896 , PHE C:897 , ALA C:898 , LYS C:903 , SER C:904 , TYR C:907 , GLU C:988 , GOL C:1105 , HOH C:1224 , HOH C:1256
binding site for residue 2YQ C 1104
18
AD9
SOFTWARE
GLY C:888 , TYR C:889 , MET C:890 , TYR C:896 , GLU C:988 , SO4 C:1101 , 2YQ C:1104 , HOH C:1215
binding site for residue GOL C 1105
19
AE1
SOFTWARE
GLY C:843 , CYS C:845 , GLN C:846 , GLU D:842 , GLY D:843 , GLU D:844 , CYS D:845 , GLN D:846
binding site for residue SO4 D 1101
20
AE2
SOFTWARE
LYS D:903 , LEU D:984 , LEU D:985 , TYR D:986 , HOH D:1231
binding site for residue SO4 D 1102
21
AE3
SOFTWARE
ARG D:858 , MET D:929 , LYS D:949
binding site for residue SO4 D 1103
22
AE4
SOFTWARE
GLN D:759 , GLU D:763 , HIS D:862 , GLY D:863 , GLY D:888 , TYR D:889 , TYR D:896 , PHE D:897 , ALA D:898 , LYS D:903 , SER D:904 , TYR D:907 , GLU D:988 , HOH D:1212 , HOH D:1237 , HOH D:1242
binding site for residue 2YQ D 1104
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (443 KB)
Header - Asym.Unit
Biol.Unit 1 (113 KB)
Header - Biol.Unit 1
Biol.Unit 2 (110 KB)
Header - Biol.Unit 2
Biol.Unit 3 (116 KB)
Header - Biol.Unit 3
Biol.Unit 4 (109 KB)
Header - Biol.Unit 4
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