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4PH9
Asym. Unit
Info
Asym.Unit (408 KB)
Biol.Unit 1 (397 KB)
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(1)
Title
:
THE STRUCTURE OF IBUPROFEN BOUND TO CYCLOOXYGENASE-2
Authors
:
B. J. Orlando, M. J. Lucido, M. G. Malkowski
Date
:
05 May 14 (Deposition) - 26 Nov 14 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.81
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Membrane Protein, Cyclooxygenase, Cox, Cox-2, Ibuprofen, Monotopic, Prostaglandin, Nsaid, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Orlando, M. J. Lucido, M. G. Malkowski
The Structure Of Ibuprofen Bound To Cyclooxygenase-2.
J. Struct. Biol. V. 189 62 2015
[
close entry info
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Hetero Components
(7, 34)
Info
All Hetero Components
1a: ACRYLIC ACID (AKRa)
1b: ACRYLIC ACID (AKRb)
1c: ACRYLIC ACID (AKRc)
1d: ACRYLIC ACID (AKRd)
2a: B-OCTYLGLUCOSIDE (BOGa)
2b: B-OCTYLGLUCOSIDE (BOGb)
2c: B-OCTYLGLUCOSIDE (BOGc)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
5a: IBUPROFEN (IBPa)
5b: IBUPROFEN (IBPb)
6a: ALPHA-D-MANNOSE (MANa)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AKR
4
Ligand/Ion
ACRYLIC ACID
2
BOG
3
Ligand/Ion
B-OCTYLGLUCOSIDE
3
EDO
13
Ligand/Ion
1,2-ETHANEDIOL
4
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
IBP
2
Ligand/Ion
IBUPROFEN
6
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
7
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:121 , VAL A:350 , TYR A:356 , GLY A:527 , ALA A:528 , SER A:531
binding site for residue IBP A 601
02
AC2
SOFTWARE
ALA A:200 , GLN A:204 , HIS A:208 , PHE A:211 , LYS A:212 , THR A:213 , HIS A:215 , ASN A:383 , TYR A:386 , HIS A:387 , HIS A:389 , LEU A:392 , VAL A:448 , ALA A:451 , GLN A:455 , HOH A:818 , HOH A:993 , HOH A:998 , HOH A:1129
binding site for residue HEM A 602
03
AC3
SOFTWARE
GLU A:180 , ARG A:186 , ILE A:443 , GLN A:446 , HOH A:718 , GLU B:180 , LYS B:181 , ARG B:185 , ARG B:186 , ARG B:439 , GLU B:487 , GLU B:491
binding site for residue BOG A 603
04
AC4
SOFTWARE
LYS A:83 , PRO A:84 , PRO A:86 , VAL A:89 , TRP A:100 , VAL A:117 , SER A:120 , ARG A:121 , HOH A:931 , HOH A:1213
binding site for residue BOG A 604
05
AC5
SOFTWARE
SER A:478 , PHE A:479 , GLU A:480 , LYS A:493 , HOH A:1037
binding site for residue AKR A 609
06
AC6
SOFTWARE
ARG A:241 , LYS A:244 , GLU A:273 , HOH A:1054 , HOH A:1192
binding site for residue AKR A 610
07
AC7
SOFTWARE
PRO A:163 , MET A:164 , LEU A:172 , ARG A:457 , LYS A:460 , TYR A:461 , HOH A:844
binding site for residue EDO A 611
08
AC8
SOFTWARE
GLU A:309 , ARG A:312 , GLU A:340 , SER A:567 , LEU A:568 , ASN A:571 , HOH A:712
binding site for residue EDO A 612
09
AC9
SOFTWARE
PRO A:548 , GLY A:553 , GLU A:554 , MET B:48
binding site for residue EDO A 613
10
AD1
SOFTWARE
LYS A:252 , TYR A:255 , ASN A:311 , HOH A:945 , HOH A:981
binding site for residue EDO A 614
11
AD2
SOFTWARE
SER A:144 , HOH A:893 , HOH A:897 , HOH A:911 , LEU B:225
binding site for residue EDO A 615
12
AD3
SOFTWARE
PHE A:210 , ASN A:376 , ILE A:378 , SER A:531 , GLY A:534 , HOH A:826 , HOH A:863 , HOH A:1200
binding site for residue EDO A 616
13
AD4
SOFTWARE
ARG B:121 , VAL B:350 , TYR B:356 , GLY B:527 , ALA B:528 , SER B:531 , LEU B:532 , EDO B:618
binding site for residue IBP B 601
14
AD5
SOFTWARE
ALA B:200 , GLN B:204 , HIS B:208 , PHE B:211 , LYS B:212 , THR B:213 , HIS B:215 , VAL B:296 , ASN B:383 , TYR B:386 , HIS B:387 , HIS B:389 , LEU B:392 , VAL B:448 , ALA B:451 , HOH B:823 , HOH B:918 , HOH B:1066
binding site for residue HEM B 602
15
AD6
SOFTWARE
LYS B:83 , PRO B:84 , PRO B:86 , VAL B:89 , ILE B:92 , TYR B:116 , SER B:120 , ARG B:121 , HOH B:898 , HOH B:1057 , HOH B:1211 , HOH B:1252
binding site for residue BOG B 603
16
AD7
SOFTWARE
ASP B:240 , ARG B:241 , LYS B:244 , VAL B:272 , GLU B:273
binding site for residue AKR B 610
17
AD8
SOFTWARE
SER B:478 , PHE B:479 , GLU B:480 , LYS B:493 , HOH B:1277
binding site for residue AKR B 611
18
AD9
SOFTWARE
PRO B:163 , LEU B:172 , SER B:456 , ARG B:457 , LYS B:460 , TYR B:461 , HOH B:842
binding site for residue EDO B 612
19
AE1
SOFTWARE
GLU B:309 , ARG B:312 , GLU B:340 , SER B:567 , LEU B:568 , ASN B:571 , HOH B:792
binding site for residue EDO B 613
20
AE2
SOFTWARE
LEU A:225 , SER B:144 , HOH B:865 , HOH B:936 , HOH B:980 , HOH B:1103
binding site for residue EDO B 614
21
AE3
SOFTWARE
PRO A:543 , HOH A:1163 , PHE B:372 , GLN B:373 , HOH B:912 , HOH B:1033 , HOH B:1122
binding site for residue EDO B 615
22
AE4
SOFTWARE
PHE B:210 , ASN B:376 , ILE B:378 , SER B:531 , GLY B:534 , EDO B:618 , HOH B:827 , HOH B:922
binding site for residue EDO B 616
23
AE5
SOFTWARE
GLY A:259 , GLY A:260 , CYS B:570 , ASN B:571 , VAL B:573 , HOH B:704
binding site for residue EDO B 617
24
AE6
SOFTWARE
PHE B:206 , TYR B:349 , TYR B:386 , SER B:531 , LEU B:535 , IBP B:601 , EDO B:616
binding site for residue EDO B 618
25
AE7
SOFTWARE
TYR A:55 , GLU A:67 , ASN A:68 , HOH A:977 , HOH A:1068
binding site for Mono-Saccharide NAG A 605 bound to ASN A 68
26
AE8
SOFTWARE
GLU A:141 , ASN A:145 , TYR A:148 , ARG A:217 , PHE A:221 , HOH A:761 , HOH A:849 , HOH A:979 , HOH A:1208 , ASP B:240 , HOH B:951
binding site for Poly-Saccharide residues NAG A 606 through NAG A 607 bound to ASN A 145
27
AE9
SOFTWARE
GLN A:407 , ASN A:411 , SER A:413 , ILE A:414
binding site for Mono-Saccharide NAG A 608 bound to ASN A 411
28
AF1
SOFTWARE
TYR B:55 , GLU B:67 , ASN B:68 , HOH B:988 , HOH B:1026
binding site for Poly-Saccharide residues NAG B 604 through NAG B 605 bound to ASN B 68
29
AF2
SOFTWARE
ASP A:240 , GLU B:141 , ASN B:145 , TYR B:148 , ARG B:217 , HOH B:761 , HOH B:804 , HOH B:809 , HOH B:850
binding site for Poly-Saccharide residues NAG B 606 through MAN B 608 bound to ASN B 145
30
AF3
SOFTWARE
GLN B:407 , ASN B:411 , SER B:413 , ILE B:414 , GLU B:417
binding site for Mono-Saccharide NAG B 609 bound to ASN B 411
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(0, 0)
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