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4PFU
Asym. Unit
Info
Asym.Unit (407 KB)
Biol.Unit 1 (201 KB)
Biol.Unit 2 (201 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MANNOBIOSE BOUND OLIGOPEPTIDE ABC TRANSPORTER, PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN (TM1226) FROM THERMOTOGA MARITIMA AT 2.05 A RESOLUTION
Authors
:
X. Lu, S. Ghimire-Rijal, M. J. Cuneo
Date
:
30 Apr 14 (Deposition) - 17 Sep 14 (Release) - 05 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oligopeptide Abc Transporter, Periplasmic Oligopeptide-Binding Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ghimire-Rijal, X. Lu, D. A. Myles, M. J. Cuneo
Duplication Of Genes In An Atp-Binding Cassette Transport System Increases Dynamic Range While Maintaining Ligand Specificity.
J. Biol. Chem. V. 289 30090 2014
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: MANNOBIOSE (MABa)
1b: MANNOBIOSE (MABb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MAB
2
Ligand/Ion
MANNOBIOSE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
SO4
20
Ligand/Ion
SULFATE ION
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:362 , ASN A:364 , ASP A:366 , PHE A:368 , GLU A:370
binding site for residue MG A 601
02
AC2
SOFTWARE
GLY A:32 , SER A:33 , TRP A:35 , ASN A:231 , ASN A:247 , PHE A:248 , MET A:249 , TRP A:387 , ASP A:389 , TRP A:390 , TRP A:541 , HOH A:734 , HOH A:741 , HOH A:752 , HOH A:753 , HOH A:800 , HOH A:1088
binding site for residue MAB A 602
03
AC3
SOFTWARE
VAL A:216 , LYS A:551 , PHE A:554 , ASN A:555
binding site for residue SO4 A 603
04
AC4
SOFTWARE
ASP A:305 , PRO A:306 , GLN A:309 , ARG A:310 , HOH A:712
binding site for residue SO4 A 604
05
AC5
SOFTWARE
LYS A:318 , ALA A:319 , ASP A:320 , PRO A:321 , HOH A:933 , HOH A:981 , HOH A:997
binding site for residue SO4 A 605
06
AC6
SOFTWARE
LYS A:352 , GLY A:367 , ARG A:369 , VAL A:403 , VAL A:404 , GLY A:405
binding site for residue SO4 A 606
07
AC7
SOFTWARE
TYR A:150 , HOH A:1025
binding site for residue SO4 A 607
08
AC8
SOFTWARE
ARG A:149 , TRP A:443 , ASN A:447 , LEU A:477 , GLU A:478 , ASN A:481 , HOH A:889 , HOH A:926 , HOH A:958
binding site for residue SO4 A 608
09
AC9
SOFTWARE
PHE A:110 , GLU A:113 , ILE A:114
binding site for residue SO4 A 609
10
AD1
SOFTWARE
GLY A:79 , GLU A:80 , TRP A:81 , HOH A:1025 , HOH A:1047
binding site for residue SO4 A 610
11
AD2
SOFTWARE
PRO A:46 , TRP A:47 , ASN A:543 , HOH A:854
binding site for residue SO4 A 611
12
AD3
SOFTWARE
GLU A:134 , SO4 A:613
binding site for residue SO4 A 612
13
AD4
SOFTWARE
ARG A:109 , ILE A:133 , GLU A:134 , THR A:135 , SO4 A:612 , HOH A:985
binding site for residue SO4 A 613
14
AD5
SOFTWARE
ASP B:362 , ASN B:364 , ASP B:366 , PHE B:368 , GLU B:370
binding site for residue MG B 601
15
AD6
SOFTWARE
GLY B:32 , SER B:33 , ASN B:231 , ASN B:247 , PHE B:248 , MET B:249 , TRP B:387 , ASP B:389 , TRP B:390 , HOH B:774 , HOH B:789 , HOH B:802 , HOH B:849 , HOH B:870 , HOH B:943 , HOH B:1060
binding site for residue MAB B 602
16
AD7
SOFTWARE
GLY B:79 , TYR B:87 , LEU B:157
binding site for residue SO4 B 603
17
AD8
SOFTWARE
ARG B:92 , GLU B:93 , GLY B:94 , ILE B:95 , LEU B:103 , ASN B:138 , ARG B:139 , HOH B:919
binding site for residue SO4 B 604
18
AD9
SOFTWARE
LYS B:318 , ALA B:319 , ASP B:320 , HOH B:913
binding site for residue SO4 B 605
19
AE1
SOFTWARE
ARG B:109 , ILE B:133 , GLU B:134 , THR B:135 , HOH B:990 , HOH B:1018
binding site for residue SO4 B 606
20
AE2
SOFTWARE
PHE B:110 , GLU B:113 , ILE B:114 , HOH B:867 , HOH B:966
binding site for residue SO4 B 607
21
AE3
SOFTWARE
ARG B:88 , PRO B:136 , ILE B:142 , HOH B:923 , HOH B:1033
binding site for residue SO4 B 608
22
AE4
SOFTWARE
TRP B:443 , ASN B:447 , GLU B:474 , LEU B:477 , GLU B:478 , ASN B:481 , HOH B:901 , HOH B:967
binding site for residue SO4 B 609
23
AE5
SOFTWARE
VAL B:216 , LYS B:551 , PHE B:554 , ASN B:555 , HOH B:979 , HOH B:1002
binding site for residue SO4 B 610
24
AE6
SOFTWARE
PRO B:251 , THR B:388 , ASP B:389 , GLN B:392 , HOH B:707
binding site for residue SO4 B 611
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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SCOP Domains
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Pfam Domains
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Asym.Unit (407 KB)
Header - Asym.Unit
Biol.Unit 1 (201 KB)
Header - Biol.Unit 1
Biol.Unit 2 (201 KB)
Header - Biol.Unit 2
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