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4PDD
Asym. Unit
Info
Asym.Unit (461 KB)
Biol.Unit 1 (152 KB)
Biol.Unit 2 (153 KB)
Biol.Unit 3 (154 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM POLAROMONAS SP JS666 (BPRO_0088, TARGET EFI-510167) BOUND TO D-ERYTHRONATE
Authors
:
M. W. Vetting, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, M. Stead, J. D. Attonito, A. Scott Glenn, S. Chowdhury, B. Evans, B. Hillerich, R. D. Seidel, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function In (Efi)
Date
:
18 Apr 14 (Deposition) - 14 May 14 (Release) - 29 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Trap Periplasmic Solute Binding Family, Enzyme Function Initiative, Efi, Structural Genomics, Solute-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. W. Vetting, N. Al-Obaidi, S. Zhao, B. San Francisco, J. Kim, D. J. Wichelecki, J. T. Bouvier, J. O. Solbiati, H. Vu, X. Zhang, D. A. Rodionov, J. D. Love, B. S. Hillerich, R. D. Seidel, R. J. Quinn, A. L. Osterman, J. E. Cronan, M. P. Jacobson, J. A. Gerlt, S. C. Almo
Experimental Strategies For Functional Annotation And Metabolism Discovery: Targeted Screening Of Solute Binding Proteins And Unbiased Panning Of Metabolomes.
Biochemistry V. 54 909 2015
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Hetero Components
(4, 18)
Info
All Hetero Components
1a: (2R,3R)-2,3,4-TRIHYDROXYBUTANOIC A... (EAXa)
1b: (2R,3R)-2,3,4-TRIHYDROXYBUTANOIC A... (EAXb)
1c: (2R,3R)-2,3,4-TRIHYDROXYBUTANOIC A... (EAXc)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
3a: MALONIC ACID (MLAa)
3b: MALONIC ACID (MLAb)
3c: MALONIC ACID (MLAc)
3d: MALONIC ACID (MLAd)
3e: MALONIC ACID (MLAe)
3f: MALONIC ACID (MLAf)
3g: MALONIC ACID (MLAg)
4a: PYROGLUTAMIC ACID (PCAa)
4b: PYROGLUTAMIC ACID (PCAb)
4c: PYROGLUTAMIC ACID (PCAc)
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Label:
No.
Name
Count
Type
Full Name
1
EAX
3
Ligand/Ion
(2R,3R)-2,3,4-TRIHYDROXYBUTANOIC ACID
2
FMT
5
Ligand/Ion
FORMIC ACID
3
MLA
7
Ligand/Ion
MALONIC ACID
4
PCA
3
Mod. Amino Acid
PYROGLUTAMIC ACID
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:40 , TYR A:47 , GLU A:79 , SER A:97 , ASN A:152 , ARG A:155 , ARG A:176 , MET A:178 , PHE A:199 , ASN A:216 , HOH A:584
binding site for residue EAX A 401
02
AC2
SOFTWARE
ARG A:80 , GLU A:84 , ASN A:103 , PHE A:104 , HOH A:817 , LYS C:142
binding site for residue MLA A 402
03
AC3
SOFTWARE
LYS A:137 , GLN A:140 , LEU A:147 , HOH A:678 , HOH A:818
binding site for residue MLA A 403
04
AC4
SOFTWARE
PHE A:115 , TYR A:313
binding site for residue MLA A 404
05
AC5
SOFTWARE
ARG A:109 , LYS C:142
binding site for residue FMT A 405
06
AC6
SOFTWARE
LYS A:142 , ARG B:109
binding site for residue FMT A 406
07
AC7
SOFTWARE
THR B:40 , TYR B:47 , GLU B:79 , SER B:97 , ASN B:152 , ARG B:155 , ARG B:176 , MET B:178 , PHE B:199 , ASN B:216 , HOH B:590
binding site for residue EAX B 401
08
AC8
SOFTWARE
GLN A:329 , PHE B:115 , ARG B:306
binding site for residue MLA B 402
09
AC9
SOFTWARE
LYS A:142 , ARG B:80 , ASN B:103 , PHE B:104 , HOH B:666 , HOH B:782
binding site for residue MLA B 403
10
AD1
SOFTWARE
LYS B:161 , ARG B:162 , ALA B:171
binding site for residue FMT B 404
11
AD2
SOFTWARE
LYS B:142 , HOH B:775 , ARG C:109
binding site for residue FMT B 405
12
AD3
SOFTWARE
THR C:40 , TYR C:47 , GLU C:79 , SER C:97 , ASN C:152 , ARG C:155 , ARG C:176 , MET C:178 , PHE C:199 , ASN C:216 , HOH C:596
binding site for residue EAX C 401
13
AD4
SOFTWARE
GLN B:87 , LYS B:142 , ARG C:80 , GLU C:84 , ASN C:103 , PHE C:104 , HOH C:663 , HOH C:841
binding site for residue MLA C 402
14
AD5
SOFTWARE
PHE C:115 , TYR C:313 , GLN C:329
binding site for residue MLA C 403
15
AD6
SOFTWARE
LYS C:161 , ARG C:162 , ALA C:171 , GLY C:172
binding site for residue FMT C 404
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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Asymmetric Unit 1
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Asym.Unit (461 KB)
Header - Asym.Unit
Biol.Unit 1 (152 KB)
Header - Biol.Unit 1
Biol.Unit 2 (153 KB)
Header - Biol.Unit 2
Biol.Unit 3 (154 KB)
Header - Biol.Unit 3
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