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4P9C
Asym. Unit
Info
Asym.Unit (279 KB)
Biol.Unit 1 (139 KB)
Biol.Unit 2 (139 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DCMP DEAMINASE FROM THE CYANOPHAGE S-TIM5 IN COMPLEX WITH DCMP AND DUMP
Authors
:
A. Marx, A. Alian
Date
:
03 Apr 14 (Deposition) - 26 Nov 14 (Release) - 14 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,E,F,J,K,L (1x)
Biol. Unit 2: B,C,D,G,H,I (1x)
Keywords
:
Dcmp Deaminase, Cytidine Deaminase, Deoxycytidylate Deaminase, S- Tim5, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Marx, A. Alian
The First Crystal Structure Of A Dttp-Bound Deoxycytidylate Deaminase Validates And Details The Allosteric-Inhibitor Binding Site.
J. Biol. Chem. V. 290 682 2015
[
close entry info
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Hetero Components
(3, 36)
Info
All Hetero Components
1a: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (DCMa)
1b: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (DCMb)
1c: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (DCMc)
1d: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (DCMd)
1e: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (DCMe)
1f: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (DCMf)
1g: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (DCMg)
1h: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (DCMh)
1i: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (DCMi)
1j: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (DCMj)
1k: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (DCMk)
1l: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (DCMl)
2a: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE (DUa)
2b: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE (DUb)
2c: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE (DUc)
2d: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE (DUd)
2e: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE (DUe)
2f: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE (DUf)
2g: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE (DUg)
2h: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE (DUh)
2i: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE (DUi)
2j: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE (DUj)
2k: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE (DUk)
2l: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE (DUl)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DCM
12
Ligand/Ion
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
2
DU
12
Ligand/Ion
2'-DEOXYURIDINE-5'-MONOPHOSPHATE
3
ZN
12
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:67 , GLU A:69 , CYS A:95 , CYS A:98 , DU A:203
binding site for residue ZN A 201
02
AC2
SOFTWARE
HIS A:40 , GLY A:41 , TRP A:42 , GLY A:44 , THR A:45 , SER A:47 , ASN A:71 , LYS A:75 , HOH A:325 , GLN L:104
binding site for residue DCM A 202
03
AC3
SOFTWARE
CYS A:22 , ARG A:24 , VAL A:27 , ASN A:43 , THR A:61 , HIS A:67 , ALA A:68 , GLU A:69 , CYS A:95 , TYR A:116 , ARG A:117 , ZN A:201 , HOH A:301 , HOH A:317
binding site for residue DU A 203
04
AC4
SOFTWARE
HIS B:67 , GLU B:69 , CYS B:95 , CYS B:98 , DU B:203 , HOH B:335
binding site for residue ZN B 201
05
AC5
SOFTWARE
HIS B:40 , GLY B:41 , TRP B:42 , GLY B:44 , THR B:45 , SER B:47 , ASN B:71 , LYS B:75 , HOH B:331 , GLN G:104
binding site for residue DCM B 202
06
AC6
SOFTWARE
CYS B:22 , ARG B:24 , VAL B:27 , ASN B:43 , THR B:61 , HIS B:67 , ALA B:68 , GLU B:69 , CYS B:95 , TYR B:116 , ARG B:117 , ZN B:201 , HOH B:304 , HOH B:311 , HOH B:334 , HOH B:335
binding site for residue DU B 203
07
AC7
SOFTWARE
HIS C:67 , GLU C:69 , CYS C:95 , CYS C:98 , DU C:203
binding site for residue ZN C 201
08
AC8
SOFTWARE
HIS C:40 , GLY C:41 , TRP C:42 , GLY C:44 , THR C:45 , SER C:47 , ASN C:71 , LYS C:75 , HOH C:310 , GLN H:104 , LYS I:2 , GLY I:35
binding site for residue DCM C 202
09
AC9
SOFTWARE
CYS C:22 , ARG C:24 , VAL C:27 , ASN C:43 , THR C:61 , HIS C:67 , ALA C:68 , GLU C:69 , CYS C:95 , TYR C:116 , ARG C:117 , ZN C:201 , HOH C:301 , HOH C:322 , HOH D:301
binding site for residue DU C 203
10
AD1
SOFTWARE
HIS D:67 , GLU D:69 , CYS D:95 , CYS D:98 , DU D:203
binding site for residue ZN D 201
11
AD2
SOFTWARE
HIS D:40 , GLY D:41 , TRP D:42 , GLY D:44 , THR D:45 , SER D:47 , ASN D:71 , HOH D:332 , GLN I:104
binding site for residue DCM D 202
12
AD3
SOFTWARE
HOH C:304 , CYS D:22 , ARG D:24 , VAL D:27 , ASN D:43 , THR D:61 , HIS D:67 , ALA D:68 , GLU D:69 , CYS D:95 , TYR D:116 , ARG D:117 , ZN D:201 , HOH D:307
binding site for residue DU D 203
13
AD4
SOFTWARE
HIS E:67 , GLU E:69 , CYS E:95 , CYS E:98 , DU E:203
binding site for residue ZN E 201
14
AD5
SOFTWARE
HIS E:40 , GLY E:41 , TRP E:42 , GLY E:44 , THR E:45 , SER E:47 , ASN E:71 , LYS E:75 , GLN K:104
binding site for residue DCM E 202
15
AD6
SOFTWARE
CYS E:22 , ARG E:24 , VAL E:27 , ASN E:43 , THR E:61 , HIS E:67 , ALA E:68 , GLU E:69 , CYS E:95 , TYR E:116 , ARG E:117 , ZN E:201 , HOH E:304 , HOH E:320 , HOH E:329
binding site for residue DU E 203
16
AD7
SOFTWARE
HIS F:67 , GLU F:69 , CYS F:95 , CYS F:98 , DU F:203
binding site for residue ZN F 201
17
AD8
SOFTWARE
HIS F:40 , GLY F:41 , TRP F:42 , GLY F:44 , THR F:45 , SER F:47 , ASN F:71 , HOH F:321 , GLN J:104 , HOH L:305
binding site for residue DCM F 202
18
AD9
SOFTWARE
CYS F:22 , ARG F:24 , VAL F:27 , ASN F:43 , THR F:61 , HIS F:67 , ALA F:68 , GLU F:69 , CYS F:95 , TYR F:116 , ARG F:117 , ZN F:201 , HOH F:301 , HOH F:325
binding site for residue DU F 203
19
AE1
SOFTWARE
HIS G:67 , GLU G:69 , CYS G:95 , CYS G:98 , DU G:203 , HOH G:323
binding site for residue ZN G 201
20
AE2
SOFTWARE
GLN B:104 , HIS G:40 , GLY G:41 , TRP G:42 , GLY G:44 , THR G:45 , SER G:47 , ASN G:71 , HOH G:318
binding site for residue DCM G 202
21
AE3
SOFTWARE
CYS G:22 , ARG G:24 , VAL G:27 , ASN G:43 , THR G:61 , HIS G:67 , ALA G:68 , GLU G:69 , CYS G:95 , TYR G:116 , ARG G:117 , ZN G:201 , HOH G:302 , HOH G:320 , HOH G:322 , HOH G:323
binding site for residue DU G 203
22
AE4
SOFTWARE
HIS H:67 , GLU H:69 , CYS H:95 , CYS H:98 , DU H:203 , HOH H:322
binding site for residue ZN H 201
23
AE5
SOFTWARE
GLN C:104 , HIS H:40 , GLY H:41 , TRP H:42 , GLY H:44 , THR H:45 , SER H:47 , ASN H:71 , HOH H:309
binding site for residue DCM H 202
24
AE6
SOFTWARE
ARG H:24 , VAL H:27 , ASN H:43 , THR H:61 , HIS H:67 , ALA H:68 , GLU H:69 , CYS H:95 , TYR H:116 , ZN H:201 , HOH H:322
binding site for residue DU H 203
25
AE7
SOFTWARE
HIS I:67 , GLU I:69 , CYS I:95 , CYS I:98 , DU I:203 , HOH I:321
binding site for residue ZN I 201
26
AE8
SOFTWARE
GLY C:35 , GLN D:104 , HIS I:40 , GLY I:41 , TRP I:42 , GLY I:44 , THR I:45 , SER I:47 , ASN I:71 , LYS I:75
binding site for residue DCM I 202
27
AE9
SOFTWARE
ARG I:24 , VAL I:27 , ASN I:43 , THR I:61 , HIS I:67 , ALA I:68 , GLU I:69 , CYS I:95 , TYR I:116 , ARG I:117 , ZN I:201 , HOH I:319 , HOH I:320 , HOH I:321
binding site for residue DU I 203
28
AF1
SOFTWARE
HIS J:67 , GLU J:69 , CYS J:95 , CYS J:98 , DU J:203 , HOH J:322
binding site for residue ZN J 201
29
AF2
SOFTWARE
GLN F:104 , HIS J:40 , GLY J:41 , TRP J:42 , GLY J:44 , THR J:45 , SER J:47 , ASN J:71 , HOH J:313 , HOH J:320
binding site for residue DCM J 202
30
AF3
SOFTWARE
CYS J:22 , ARG J:24 , VAL J:27 , ASN J:43 , THR J:61 , HIS J:67 , ALA J:68 , GLU J:69 , CYS J:95 , TYR J:116 , ARG J:117 , ZN J:201 , HOH J:321 , HOH J:322
binding site for residue DU J 203
31
AF4
SOFTWARE
HIS K:67 , GLU K:69 , CYS K:95 , CYS K:98 , DU K:203
binding site for residue ZN K 201
32
AF5
SOFTWARE
GLN E:104 , HIS K:40 , GLY K:41 , TRP K:42 , GLY K:44 , THR K:45 , SER K:47 , ASN K:71
binding site for residue DCM K 202
33
AF6
SOFTWARE
CYS K:22 , ARG K:24 , VAL K:27 , ASN K:43 , THR K:61 , HIS K:67 , ALA K:68 , GLU K:69 , CYS K:95 , TYR K:116 , ZN K:201
binding site for residue DU K 203
34
AF7
SOFTWARE
HIS L:67 , GLU L:69 , CYS L:95 , CYS L:98 , DU L:203 , HOH L:312
binding site for residue ZN L 201
35
AF8
SOFTWARE
GLN A:104 , HOH F:317 , HIS L:40 , GLY L:41 , TRP L:42 , GLY L:44 , THR L:45 , SER L:47 , ASN L:71
binding site for residue DCM L 202
36
AF9
SOFTWARE
CYS L:22 , ARG L:24 , ASN L:43 , THR L:61 , HIS L:67 , ALA L:68 , GLU L:69 , CYS L:95 , TYR L:116 , ARG L:117 , ZN L:201 , HOH L:312 , HOH L:313
binding site for residue DU L 203
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