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4P4J
Asym. Unit
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Asym.Unit (279 KB)
Biol.Unit 1 (540 KB)
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(1)
Title
:
X-RAY STRUCTURE OF HUMAN GLUTAMATE CARBOXYPEPTIDASE II (GCPII) IN COMPLEX WITH A PHOSPHORAMIDATE INHIBITOR T33D
Authors
:
C. Barinka
Date
:
12 Mar 14 (Deposition) - 20 May 15 (Release) - 20 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.66
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
Z. Novakova, J. Cerny, C. J. Choy, J. R. Nedrow, J. K. Choi, J. Lubkowski C. E. Berkman, C. Barinka
Design Of Composite Inhibitors Targeting Glutamate Carboxypeptidase Ii: The Importance Of Effector Functionalities.
Febs J. V. 283 130 2016
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Hetero Components
(7, 18)
Info
All Hetero Components
1a: N-[(S)-[(2R)-2-(BENZOYLAMINO)-2-CA... (2H9a)
2a: BETA-D-MANNOSE (BMAa)
3a: CALCIUM ION (CAa)
4a: CHLORIDE ION (CLa)
5a: ALPHA-D-MANNOSE (MANa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
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Label:
No.
Name
Count
Type
Full Name
1
2H9
1
Ligand/Ion
N-[(S)-[(2R)-2-(BENZOYLAMINO)-2-CARBOXYETHOXY](HYDROXY)PHOSPHORYL]-L-GLUTAMIC ACID
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CA
1
Ligand/Ion
CALCIUM ION
4
CL
1
Ligand/Ion
CHLORIDE ION
5
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
ZN
2
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:387 , GLU A:425 , HIS A:553 , ZN A:815 , 2H9 A:818
binding site for residue ZN A 814
02
AC2
SOFTWARE
HIS A:377 , ASP A:387 , GLU A:425 , ASP A:453 , ZN A:814 , 2H9 A:818
binding site for residue ZN A 815
03
AC3
SOFTWARE
THR A:269 , TYR A:272 , GLU A:433 , GLU A:436 , HOH A:1012
binding site for residue CA A 816
04
AC4
SOFTWARE
ASN A:451 , ASP A:453 , ARG A:534 , ARG A:536
binding site for residue CL A 817
05
AC5
SOFTWARE
ARG A:210 , ASN A:257 , HIS A:377 , ASP A:387 , GLU A:424 , GLU A:425 , GLY A:427 , LEU A:428 , ASP A:453 , GLU A:457 , ARG A:463 , GLY A:518 , ASN A:519 , ARG A:534 , ARG A:536 , TYR A:552 , HIS A:553 , LYS A:699 , TYR A:700 , ZN A:814 , ZN A:815 , HOH A:1015 , HOH A:1147 , HOH A:1438 , HOH A:1483 , HOH A:1486
binding site for residue 2H9 A 818
06
AC6
SOFTWARE
ASN A:76 , GLN A:79 , GLN A:95 , GLN A:99 , HOH A:1202 , HOH A:1209 , HOH A:1229 , HOH A:1420 , HOH A:1450
binding site for Poly-Saccharide residues NAG A 801 through NAG A 802 bound to ASN A 76
07
AC7
SOFTWARE
ASN A:121 , THR A:123 , HIS A:124 , THR A:349 , HOH A:1179
binding site for Mono-Saccharide NAG A 803 bound to ASN A 121
08
AC8
SOFTWARE
TYR A:127 , GLU A:137 , ILE A:138 , ASN A:140 , HOH A:1317 , HOH A:1385 , HOH A:1447
binding site for Poly-Saccharide residues NAG A 804 through NAG A 805 bound to ASN A 140
09
AC9
SOFTWARE
ASN A:195 , SER A:197
binding site for Mono-Saccharide NAG A 806 bound to ASN A 195
10
AD1
SOFTWARE
TRP A:246 , ASN A:459 , PHE A:565 , TYR A:566 , HOH A:1065 , HOH A:1218 , HOH A:1304
binding site for Mono-Saccharide NAG A 807 bound to ASN A 459
11
AD2
SOFTWARE
SER A:472 , ASN A:476 , PRO A:594 , GLN A:651 , HOH A:1180 , HOH A:1261 , HOH A:1475
binding site for Poly-Saccharide residues NAG A 808 through NAG A 809 bound to ASN A 476
12
AD3
SOFTWARE
HIS A:112 , PHE A:235 , LYS A:240 , SER A:241 , GLU A:276 , ARG A:354 , SER A:631 , SER A:634 , ASN A:638 , GLN A:740 , HOH A:912 , HOH A:915 , HOH A:924 , HOH A:933 , HOH A:938 , HOH A:987 , HOH A:1108
binding site for Poly-Saccharide residues NAG A 810 through MAN A 813 bound to ASN A 638
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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