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4OX9
Asym. Unit
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Asym.Unit (961 KB)
Biol.Unit 1 (948 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE AMINOGLYCOSIDE RESISTANCE METHYLTRANSFERASE NPMA BOUND TO THE 30S RIBOSOMAL SUBUNIT
Authors
:
J. A. Dunkle, G. L. Conn, C. M. Dunham
Date
:
04 Feb 14 (Deposition) - 09 Apr 14 (Release) - 30 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,Y
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,Y (1x)
Keywords
:
Protein Biosynthesis, Ribosome, Rna, 30S, 16S, Ribosomal Subunit, Aminoglycoside, A1408, Methyltransferase, Ribosome-Antibiotic Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Dunkle, K. Vinal, P. M. Desai, N. Zelinskaya, M. Savic, D. M. West, G. L. Conn, C. M. Dunham
Molecular Recognition And Modification Of The 30S Ribosome By The Aminoglycoside-Resistance Methyltransferase Npma.
Proc. Natl. Acad. Sci. Usa V. 111 6275 2014
[
close entry info
]
Hetero Components
(3, 123)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1aa: MAGNESIUM ION (MGaa)
1ab: MAGNESIUM ION (MGab)
1ac: MAGNESIUM ION (MGac)
1ad: MAGNESIUM ION (MGad)
1ae: MAGNESIUM ION (MGae)
1af: MAGNESIUM ION (MGaf)
1ag: MAGNESIUM ION (MGag)
1ah: MAGNESIUM ION (MGah)
1ai: MAGNESIUM ION (MGai)
1aj: MAGNESIUM ION (MGaj)
1ak: MAGNESIUM ION (MGak)
1al: MAGNESIUM ION (MGal)
1am: MAGNESIUM ION (MGam)
1an: MAGNESIUM ION (MGan)
1ao: MAGNESIUM ION (MGao)
1ap: MAGNESIUM ION (MGap)
1aq: MAGNESIUM ION (MGaq)
1ar: MAGNESIUM ION (MGar)
1as: MAGNESIUM ION (MGas)
1at: MAGNESIUM ION (MGat)
1au: MAGNESIUM ION (MGau)
1av: MAGNESIUM ION (MGav)
1aw: MAGNESIUM ION (MGaw)
1ax: MAGNESIUM ION (MGax)
1ay: MAGNESIUM ION (MGay)
1az: MAGNESIUM ION (MGaz)
1b: MAGNESIUM ION (MGb)
1ba: MAGNESIUM ION (MGba)
1bb: MAGNESIUM ION (MGbb)
1bc: MAGNESIUM ION (MGbc)
1bd: MAGNESIUM ION (MGbd)
1be: MAGNESIUM ION (MGbe)
1bf: MAGNESIUM ION (MGbf)
1bg: MAGNESIUM ION (MGbg)
1bh: MAGNESIUM ION (MGbh)
1bi: MAGNESIUM ION (MGbi)
1bj: MAGNESIUM ION (MGbj)
1bk: MAGNESIUM ION (MGbk)
1bl: MAGNESIUM ION (MGbl)
1bm: MAGNESIUM ION (MGbm)
1bn: MAGNESIUM ION (MGbn)
1bo: MAGNESIUM ION (MGbo)
1bp: MAGNESIUM ION (MGbp)
1bq: MAGNESIUM ION (MGbq)
1br: MAGNESIUM ION (MGbr)
1bs: MAGNESIUM ION (MGbs)
1bt: MAGNESIUM ION (MGbt)
1bu: MAGNESIUM ION (MGbu)
1bv: MAGNESIUM ION (MGbv)
1bw: MAGNESIUM ION (MGbw)
1bx: MAGNESIUM ION (MGbx)
1by: MAGNESIUM ION (MGby)
1bz: MAGNESIUM ION (MGbz)
1c: MAGNESIUM ION (MGc)
1ca: MAGNESIUM ION (MGca)
1cb: MAGNESIUM ION (MGcb)
1cc: MAGNESIUM ION (MGcc)
1cd: MAGNESIUM ION (MGcd)
1ce: MAGNESIUM ION (MGce)
1cf: MAGNESIUM ION (MGcf)
1cg: MAGNESIUM ION (MGcg)
1ch: MAGNESIUM ION (MGch)
1ci: MAGNESIUM ION (MGci)
1cj: MAGNESIUM ION (MGcj)
1ck: MAGNESIUM ION (MGck)
1cl: MAGNESIUM ION (MGcl)
1cm: MAGNESIUM ION (MGcm)
1cn: MAGNESIUM ION (MGcn)
1co: MAGNESIUM ION (MGco)
1cp: MAGNESIUM ION (MGcp)
1cq: MAGNESIUM ION (MGcq)
1cr: MAGNESIUM ION (MGcr)
1cs: MAGNESIUM ION (MGcs)
1ct: MAGNESIUM ION (MGct)
1cu: MAGNESIUM ION (MGcu)
1cv: MAGNESIUM ION (MGcv)
1cw: MAGNESIUM ION (MGcw)
1cx: MAGNESIUM ION (MGcx)
1cy: MAGNESIUM ION (MGcy)
1cz: MAGNESIUM ION (MGcz)
1d: MAGNESIUM ION (MGd)
1da: MAGNESIUM ION (MGda)
1db: MAGNESIUM ION (MGdb)
1dc: MAGNESIUM ION (MGdc)
1dd: MAGNESIUM ION (MGdd)
1de: MAGNESIUM ION (MGde)
1df: MAGNESIUM ION (MGdf)
1dg: MAGNESIUM ION (MGdg)
1dh: MAGNESIUM ION (MGdh)
1di: MAGNESIUM ION (MGdi)
1dj: MAGNESIUM ION (MGdj)
1dk: MAGNESIUM ION (MGdk)
1dl: MAGNESIUM ION (MGdl)
1dm: MAGNESIUM ION (MGdm)
1dn: MAGNESIUM ION (MGdn)
1do: MAGNESIUM ION (MGdo)
1dp: MAGNESIUM ION (MGdp)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
1s: MAGNESIUM ION (MGs)
1t: MAGNESIUM ION (MGt)
1u: MAGNESIUM ION (MGu)
1v: MAGNESIUM ION (MGv)
1w: MAGNESIUM ION (MGw)
1x: MAGNESIUM ION (MGx)
1y: MAGNESIUM ION (MGy)
1z: MAGNESIUM ION (MGz)
2a: SINEFUNGIN (SFGa)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
120
Ligand/Ion
MAGNESIUM ION
2
SFG
1
Ligand/Ion
SINEFUNGIN
3
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(94, 94)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
58: AI4 (SOFTWARE)
59: AI5 (SOFTWARE)
60: AI6 (SOFTWARE)
61: AI7 (SOFTWARE)
62: AI8 (SOFTWARE)
63: AI9 (SOFTWARE)
64: AJ1 (SOFTWARE)
65: AJ2 (SOFTWARE)
66: AJ3 (SOFTWARE)
67: AJ4 (SOFTWARE)
68: AJ5 (SOFTWARE)
69: AJ6 (SOFTWARE)
70: AJ7 (SOFTWARE)
71: AJ8 (SOFTWARE)
72: AJ9 (SOFTWARE)
73: AK1 (SOFTWARE)
74: AK2 (SOFTWARE)
75: AK3 (SOFTWARE)
76: AK4 (SOFTWARE)
77: AK5 (SOFTWARE)
78: AK6 (SOFTWARE)
79: AK7 (SOFTWARE)
80: AK8 (SOFTWARE)
81: AK9 (SOFTWARE)
82: AL1 (SOFTWARE)
83: AL2 (SOFTWARE)
84: AL3 (SOFTWARE)
85: AL4 (SOFTWARE)
86: AL5 (SOFTWARE)
87: AL6 (SOFTWARE)
88: AL7 (SOFTWARE)
89: AL8 (SOFTWARE)
90: AL9 (SOFTWARE)
91: AM1 (SOFTWARE)
92: AM2 (SOFTWARE)
93: AM3 (SOFTWARE)
94: AM4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G A:703 , C A:1452
binding site for residue MG A 1600
02
AC2
SOFTWARE
G A:257 , G A:258 , G A:266
binding site for residue MG A 1601
03
AC3
SOFTWARE
G A:577
binding site for residue MG A 1603
04
AC4
SOFTWARE
G A:581 , G A:758
binding site for residue MG A 1606
05
AC5
SOFTWARE
G A:592 , G A:593 , U A:646
binding site for residue MG A 1607
06
AC6
SOFTWARE
C A:58 , A A:59 , U A:387
binding site for residue MG A 1608
07
AC7
SOFTWARE
G A:11 , U A:12 , G A:21 , G A:22
binding site for residue MG A 1609
08
AC8
SOFTWARE
A A:665 , G A:666
binding site for residue MG A 1610
09
AC9
SOFTWARE
G A:115
binding site for residue MG A 1611
10
AD1
SOFTWARE
U A:14 , U A:17
binding site for residue MG A 1613
11
AD2
SOFTWARE
G A:297 , G A:299
binding site for residue MG A 1614
12
AD3
SOFTWARE
G A:575 , G A:576
binding site for residue MG A 1615
13
AD4
SOFTWARE
A A:583 , G A:584
binding site for residue MG A 1616
14
AD5
SOFTWARE
G A:1432
binding site for residue MG A 1617
15
AD6
SOFTWARE
G A:1517 , ARG Y:37
binding site for residue MG A 1619
16
AD7
SOFTWARE
G A:377
binding site for residue MG A 1620
17
AD8
SOFTWARE
G A:438
binding site for residue MG A 1621
18
AD9
SOFTWARE
C A:749 , G A:750
binding site for residue MG A 1622
19
AE1
SOFTWARE
A A:766 , C A:812
binding site for residue MG A 1624
20
AE2
SOFTWARE
A A:768
binding site for residue MG A 1625
21
AE3
SOFTWARE
G A:774
binding site for residue MG A 1627
22
AE4
SOFTWARE
A A:777
binding site for residue MG A 1628
23
AE5
SOFTWARE
G A:576 , C A:578
binding site for residue MG A 1629
24
AE6
SOFTWARE
G A:362
binding site for residue MG A 1631
25
AE7
SOFTWARE
A A:453 , C A:454
binding site for residue MG A 1632
26
AE8
SOFTWARE
A A:509 , A A:510
binding site for residue MG A 1633
27
AE9
SOFTWARE
U A:560
binding site for residue MG A 1634
28
AF1
SOFTWARE
A A:572
binding site for residue MG A 1636
29
AF2
SOFTWARE
G A:21
binding site for residue MG A 1637
30
AF3
SOFTWARE
C A:48 , U A:114 , G A:115
binding site for residue MG A 1638
31
AF4
SOFTWARE
G A:595 , C A:596 , G A:597 , U A:598
binding site for residue MG A 1639
32
AF5
SOFTWARE
G A:837 , G A:838
binding site for residue MG A 1640
33
AF6
SOFTWARE
G A:858 , G A:869
binding site for residue MG A 1641
34
AF7
SOFTWARE
G A:570
binding site for residue MG A 1642
35
AF8
SOFTWARE
A A:860
binding site for residue MG A 1643
36
AF9
SOFTWARE
G A:637 , G A:638
binding site for residue MG A 1644
37
AG1
SOFTWARE
G A:885 , G A:886 , U A:911
binding site for residue MG A 1645
38
AG2
SOFTWARE
G A:1385
binding site for residue MG A 1646
39
AG3
SOFTWARE
A A:937 , A A:938
binding site for residue MG A 1647
40
AG4
SOFTWARE
C A:934 , U A:1345
binding site for residue MG A 1648
41
AG5
SOFTWARE
G A:1370 , G A:1371
binding site for residue MG A 1651
42
AG6
SOFTWARE
A A:602 , G A:635 , U A:636
binding site for residue MG A 1655
43
AG7
SOFTWARE
G A:588
binding site for residue MG A 1657
44
AG8
SOFTWARE
G A:944 , G A:945
binding site for residue MG A 1659
45
AG9
SOFTWARE
A A:964 , U A:1199
binding site for residue MG A 1660
46
AH1
SOFTWARE
C A:979 , C A:980 , U A:981 , U A:982 , G A:1221 , G A:1222
binding site for residue MG A 1661
47
AH2
SOFTWARE
G A:1053 , C A:1054 , G A:1197
binding site for residue MG A 1663
48
AH3
SOFTWARE
C A:1054 , U A:1196 , G A:1197 , G A:1198
binding site for residue MG A 1664
49
AH4
SOFTWARE
G A:1441 , G A:1455 , THR T:35
binding site for residue MG A 1665
50
AH5
SOFTWARE
G A:1469
binding site for residue MG A 1667
51
AH6
SOFTWARE
A A:915
binding site for residue MG A 1668
52
AH7
SOFTWARE
G A:301
binding site for residue MG A 1669
53
AH8
SOFTWARE
G A:299 , G A:558 , U A:560 , G A:566
binding site for residue MG A 1670
54
AH9
SOFTWARE
G A:324
binding site for residue MG A 1671
55
AI1
SOFTWARE
U A:516 , G A:517 , A A:532 , A A:533
binding site for residue MG A 1672
56
AI2
SOFTWARE
A A:572 , A A:573 , A A:574
binding site for residue MG A 1673
57
AI3
SOFTWARE
G A:649 , G A:650
binding site for residue MG A 1674
58
AI4
SOFTWARE
G A:595 , U A:641
binding site for residue MG A 1675
59
AI5
SOFTWARE
A A:608 , G A:610
binding site for residue MG A 1676
60
AI6
SOFTWARE
G A:888
binding site for residue MG A 1677
61
AI7
SOFTWARE
G A:895
binding site for residue MG A 1678
62
AI8
SOFTWARE
A A:53 , A A:353
binding site for residue MG A 1679
63
AI9
SOFTWARE
A A:1110 , C A:1189
binding site for residue MG A 1680
64
AJ1
SOFTWARE
A A:1067 , G A:1068 , G A:1094 , G A:1387
binding site for residue MG A 1681
65
AJ2
SOFTWARE
U A:1095 , G A:1108
binding site for residue MG A 1682
66
AJ3
SOFTWARE
U A:1083
binding site for residue MG A 1683
67
AJ4
SOFTWARE
G A:1224
binding site for residue MG A 1685
68
AJ5
SOFTWARE
G A:1266
binding site for residue MG A 1686
69
AJ6
SOFTWARE
C A:924 , G A:925 , U A:1390 , U A:1391 , G A:1392
binding site for residue MG A 1689
70
AJ7
SOFTWARE
A A:1499 , A A:1500 , G A:1504 , G A:1505
binding site for residue MG A 1691
71
AJ8
SOFTWARE
G A:64 , A A:101
binding site for residue MG A 1692
72
AJ9
SOFTWARE
A A:8 , A A:298
binding site for residue MG A 1695
73
AK1
SOFTWARE
A A:535 , C A:536
binding site for residue MG A 1696
74
AK2
SOFTWARE
G A:148 , A A:172
binding site for residue MG A 1697
75
AK3
SOFTWARE
G A:168
binding site for residue MG A 1698
76
AK4
SOFTWARE
A A:195
binding site for residue MG A 1699
77
AK5
SOFTWARE
A A:116 , G A:117 , G A:289
binding site for residue MG A 1701
78
AK6
SOFTWARE
G A:293 , U A:304 , G A:305
binding site for residue MG A 1702
79
AK7
SOFTWARE
C A:330 , C A:352
binding site for residue MG A 1703
80
AK8
SOFTWARE
C A:372 , U A:375 , G A:376 , U A:387
binding site for residue MG A 1704
81
AK9
SOFTWARE
G A:410 , A A:431
binding site for residue MG A 1705
82
AL1
SOFTWARE
C A:504 , G A:505
binding site for residue MG A 1706
83
AL2
SOFTWARE
G A:111
binding site for residue MG A 1707
84
AL3
SOFTWARE
A A:782 , A A:794
binding site for residue MG A 1710
85
AL4
SOFTWARE
U A:133 , U A:229
binding site for residue MG A 1712
86
AL5
SOFTWARE
G A:1057 , G A:1058 , C A:1059 , G A:1198 , U A:1199
binding site for residue MG A 1713
87
AL6
SOFTWARE
C A:1303 , G A:1304
binding site for residue MG A 1715
88
AL7
SOFTWARE
G A:1520
binding site for residue MG A 1716
89
AL8
SOFTWARE
ASP B:166 , ASP B:191 , ASP B:205
binding site for residue MG B 301
90
AL9
SOFTWARE
CYS D:9 , CYS D:12 , LEU D:19 , CYS D:26 , CYS D:31
binding site for residue ZN D 301
91
AM1
SOFTWARE
U A:863 , GLU E:83
binding site for residue MG E 201
92
AM2
SOFTWARE
CYS N:24 , CYS N:27 , CYS N:40 , CYS N:43
binding site for residue ZN N 101
93
AM3
SOFTWARE
C A:980 , ALA N:20
binding site for residue MG N 102
94
AM4
SOFTWARE
A A:1408 , C A:1484 , U A:1485 , GLY Y:32 , THR Y:33 , GLY Y:34 , ASP Y:55 , PRO Y:56 , ALA Y:87 , GLU Y:88 , LEU Y:104 , PHE Y:105 , THR Y:109 , LEU Y:110 , LEU Y:196 , TRP Y:197
binding site for residue SFG Y 301
[
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]
SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
(0, 0)
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Asym.Unit (961 KB)
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