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4OUR
Asym. Unit
Info
Asym.Unit (315 KB)
Biol.Unit 1 (306 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA PHYTOCHROME B PHOTOSENSORY MODULE
Authors
:
E. Sethe Burgie, A. N. Bussell, J. M. Walker, K. Dubiel, R. D. Vierstra
Date
:
18 Feb 14 (Deposition) - 16 Jul 14 (Release) - 30 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
N-Terminal Extension, Pas Domain, Gaf Domain, Phy Domain, Hairpin, Photosensor, Signal Transduction, Phytochrome Interacting Factor, Phytochromobilin, Cytosol/Nucleus, Transcription, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. S. Burgie, A. N. Bussell, J. M. Walker, K. Dubiel, R. D. Vierstra
Crystal Structure Of The Photosensing Module From A Red/Far-Red Light-Absorbing Plant Phytochrome.
Proc. Natl. Acad. Sci. Usa V. 111 10179 2014
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Hetero Components
(5, 35)
Info
All Hetero Components
1a: PHYTOCHROMOBILIN, BOUND FORM (2VOa)
1b: PHYTOCHROMOBILIN, BOUND FORM (2VOb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: TRIETHYLENE GLYCOL (PGEa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
5a: (UNKa)
5b: (UNKb)
5c: (UNKc)
5d: (UNKd)
5e: (UNKe)
5f: (UNKf)
5g: (UNKg)
5h: (UNKh)
5i: (UNKi)
5j: (UNKj)
5k: (UNKk)
5l: (UNKl)
5m: (UNKm)
5n: (UNKn)
5o: (UNKo)
5p: (UNKp)
5q: (UNKq)
5r: (UNKr)
5s: (UNKs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2VO
2
Ligand/Ion
PHYTOCHROMOBILIN, BOUND FORM
2
GOL
2
Ligand/Ion
GLYCEROL
3
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
4
SO4
11
Ligand/Ion
SULFATE ION
5
UNK
19
Mod. Amino Acid
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:236 , ARG A:240 , ARG B:182
BINDING SITE FOR RESIDUE SO4 A 701
02
AC2
SOFTWARE
GLN A:577 , ARG A:578 , MET A:579 , HIS A:580 , ARG B:578 , MET B:579 , HIS B:580
BINDING SITE FOR RESIDUE SO4 A 702
03
AC3
SOFTWARE
ARG A:265 , ARG A:292 , ASP A:293
BINDING SITE FOR RESIDUE SO4 A 703
04
AC4
SOFTWARE
THR A:168 , SER A:169 , LYS A:195
BINDING SITE FOR RESIDUE SO4 A 704
05
AC5
SOFTWARE
ARG A:164
BINDING SITE FOR RESIDUE SO4 A 705
06
AC6
SOFTWARE
GLN A:109 , ARG A:110
BINDING SITE FOR RESIDUE SO4 A 706
07
AC7
SOFTWARE
LYS A:317 , ARG A:395 , LEU A:396
BINDING SITE FOR RESIDUE SO4 A 707
08
AC8
SOFTWARE
ARG A:272 , GLU A:296 , TYR A:298 , GLY A:366 , SER A:367 , HIS A:403
BINDING SITE FOR RESIDUE GOL A 708
09
AC9
SOFTWARE
ILE A:108 , MET A:274 , TYR A:276 , TYR A:303 , THR A:306 , ASP A:307 , ILE A:308 , PRO A:309 , PHE A:316 , ARG A:322 , ILE A:324 , ARG A:352 , PRO A:354 , HIS A:355 , CYS A:357 , HIS A:358 , TYR A:361 , MET A:365 , HIS A:403 , ARG A:578 , HIS A:580 , HOH A:801 , HOH A:802
BINDING SITE FOR RESIDUE 2VO A 709
10
BC1
SOFTWARE
ILE A:242 , PHE B:420 , GLN B:423
BINDING SITE FOR RESIDUE GOL B 701
11
BC2
SOFTWARE
ARG B:578 , ARG B:582
BINDING SITE FOR RESIDUE SO4 B 702
12
BC3
SOFTWARE
ARG B:107
BINDING SITE FOR RESIDUE SO4 B 703
13
BC4
SOFTWARE
ARG B:265 , ARG B:292 , ASP B:293
BINDING SITE FOR RESIDUE SO4 B 704
14
BC5
SOFTWARE
THR B:168 , SER B:169
BINDING SITE FOR RESIDUE SO4 B 705
15
BC6
SOFTWARE
TRP B:191 , TYR B:202 , GLY B:230 , GLN B:233
BINDING SITE FOR RESIDUE PGE B 706
16
BC7
SOFTWARE
TYR B:104 , ILE B:108 , MET B:274 , TYR B:276 , TYR B:303 , THR B:306 , ASP B:307 , ILE B:308 , PRO B:309 , PHE B:316 , ARG B:322 , ILE B:324 , ARG B:352 , HIS B:355 , CYS B:357 , HIS B:358 , TYR B:361 , MET B:365 , HIS B:403 , ARG B:578 , HIS B:580 , HOH B:802
BINDING SITE FOR RESIDUE 2VO B 707
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Asymmetric Unit 1
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