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Asym. Unit
Info
Asym.Unit (798 KB)
Biol.Unit 1 (397 KB)
Biol.Unit 2 (393 KB)
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(1)
Title
:
THE COMPLEX OF MURINE CYCLOOXYGENASE-2 WITH A CONJUGATE OF INDOMEFATHIN AND PODOPHYLLOTOXIN, N-{(SUCCINYLPODOPHYLLOTOXINYL)BUT-4-YL}-2-{1-(4-CHLOROBENZOYL)-5-METHOXY-2-METHYL-1H-INDOL-3-YL}ACETAMIDE
Authors
:
S. Xu, M. J. Uddin, S. Banerjee, L. J. Marnett
Date
:
13 Feb 14 (Deposition) - 08 Apr 15 (Release) - 15 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.11
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Oxidoreductase, Nsaids, Glycosylation, Membrane, Oxidoreductase- Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Uddin, B. C. Crews, S. Xu, K. Ghebreselasie, C. K. Daniel, P. J. Kingsley, S. Banerjee, L. J. Marnett
Antitumor Activity Of Cytotoxic Cyclooxygenase-2 Inhibitors
Acs Chem. Biol. V. 11 3052 2016
[
close entry info
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Hetero Components
(4, 26)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3a: (5S,5AS,8AS,9S)-8-OXO-9-(3,4,5-TRI... (IXPa)
3b: (5S,5AS,8AS,9S)-8-OXO-9-(3,4,5-TRI... (IXPb)
3c: (5S,5AS,8AS,9S)-8-OXO-9-(3,4,5-TRI... (IXPc)
3d: (5S,5AS,8AS,9S)-8-OXO-9-(3,4,5-TRI... (IXPd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
2
Ligand/Ion
B-OCTYLGLUCOSIDE
2
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
IXP
4
Ligand/Ion
(5S,5AS,8AS,9S)-8-OXO-9-(3,4,5-TRIMETHOXYPHENYL)-5,5A,6,8,8A,9-HEXAHYDROFURO[3',4':6,7]NAPHTHO[2,3-D][1,3]DIOXOL-5-YL 4-{[4-({[1-(4-CHLOROBENZOYL)-5-METHOXY-2-METHYL-1H-INDOL-3-YL]ACETYL}AMINO)BUTYL]AMINO}-4-OXOBUTANOATE
4
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:55 , GLU A:67 , ASN A:68 , HOH A:994 , HOH A:1003
BINDING SITE FOR RESIDUE NAG A 701
02
AC2
SOFTWARE
GLU A:140 , ASN A:144 , TYR A:147 , ARG A:216 , NAG A:703 , HOH A:802 , HOH A:846 , HOH A:1067
BINDING SITE FOR RESIDUE NAG A 702
03
AC3
SOFTWARE
ARG A:216 , NAG A:702 , HOH A:891 , HOH A:1027
BINDING SITE FOR RESIDUE NAG A 703
04
AC4
SOFTWARE
GLN A:406 , ASN A:410 , SER A:412 , ILE A:413
BINDING SITE FOR RESIDUE NAG A 704
05
AC5
SOFTWARE
ALA A:199 , PHE A:200 , GLN A:203 , HIS A:207 , PHE A:210 , LYS A:211 , THR A:212 , HIS A:214 , ASN A:382 , TYR A:385 , HIS A:386 , HIS A:388 , LEU A:391 , GLN A:454 , HOH A:860
BINDING SITE FOR RESIDUE HEM A 705
06
AC6
SOFTWARE
HIS A:90 , TYR A:115 , SER A:119 , ARG A:120 , VAL A:349 , LEU A:352 , SER A:353 , TYR A:355 , TRP A:387 , MET A:522 , VAL A:523 , GLY A:526 , ALA A:527 , SER A:530 , LEU A:531
BINDING SITE FOR RESIDUE IXP A 706
07
AC7
SOFTWARE
GLU A:179 , ARG A:185 , ILE A:442 , GLN A:445 , LYS B:180 , ARG B:184 , ARG B:185 , ARG B:438 , GLU B:486 , GLU B:490
BINDING SITE FOR RESIDUE BOG B 701
08
AC8
SOFTWARE
SER B:38 , TYR B:55 , GLU B:67 , ASN B:68 , HOH B:1108
BINDING SITE FOR RESIDUE NAG B 702
09
AC9
SOFTWARE
GLU B:140 , ASN B:144 , TYR B:147 , ARG B:216 , PHE B:220 , NAG B:704 , HOH B:804 , HOH B:834 , HOH B:1044
BINDING SITE FOR RESIDUE NAG B 703
10
BC1
SOFTWARE
ARG B:216 , NAG B:703 , HOH B:1066
BINDING SITE FOR RESIDUE NAG B 704
11
BC2
SOFTWARE
GLN B:406 , ASN B:410 , SER B:412 , ILE B:413 , HOH B:993 , HOH B:1076
BINDING SITE FOR RESIDUE NAG B 705
12
BC3
SOFTWARE
TYR B:148 , ALA B:199 , PHE B:200 , GLN B:203 , HIS B:207 , PHE B:210 , LYS B:211 , THR B:212 , HIS B:214 , ASN B:382 , TYR B:385 , HIS B:386 , HIS B:388 , LEU B:391 , HOH B:822 , HOH B:952 , HOH B:1073
BINDING SITE FOR RESIDUE HEM B 706
13
BC4
SOFTWARE
TYR B:115 , ARG B:120 , VAL B:349 , LEU B:352 , SER B:353 , TYR B:355 , TRP B:387 , MET B:522 , VAL B:523 , GLY B:526 , ALA B:527 , SER B:530 , LEU B:531
BINDING SITE FOR RESIDUE IXP B 707
14
BC5
SOFTWARE
TYR C:55 , GLU C:67 , ASN C:68 , HOH C:1000
BINDING SITE FOR RESIDUE NAG C 701
15
BC6
SOFTWARE
GLU C:140 , ASN C:144 , TYR C:147 , ARG C:216 , NAG C:703 , HOH C:805 , HOH C:811
BINDING SITE FOR RESIDUE NAG C 702
16
BC7
SOFTWARE
ARG C:216 , NAG C:702
BINDING SITE FOR RESIDUE NAG C 703
17
BC8
SOFTWARE
GLN C:406 , ASN C:410 , SER C:412 , ILE C:413
BINDING SITE FOR RESIDUE NAG C 704
18
BC9
SOFTWARE
ALA C:199 , PHE C:200 , GLN C:203 , HIS C:207 , PHE C:210 , LYS C:211 , THR C:212 , HIS C:214 , ASN C:382 , TYR C:385 , HIS C:386 , HIS C:388 , LEU C:391 , LEU C:408 , VAL C:447 , HOH C:1072
BINDING SITE FOR RESIDUE HEM C 705
19
CC1
SOFTWARE
ARG C:120 , VAL C:349 , SER C:353 , TYR C:355 , LEU C:384 , TRP C:387 , MET C:522 , VAL C:523 , GLY C:526 , ALA C:527 , SER C:530 , LEU C:531 , HOH C:1119
BINDING SITE FOR RESIDUE IXP C 706
20
CC2
SOFTWARE
TYR D:55 , GLU D:67 , ASN D:68 , HOH D:1123 , HOH D:1162
BINDING SITE FOR RESIDUE NAG D 701
21
CC3
SOFTWARE
GLU D:140 , ASN D:144 , TYR D:147 , ARG D:216 , NAG D:703 , HOH D:811 , HOH D:824 , HOH D:946 , HOH D:956
BINDING SITE FOR RESIDUE NAG D 702
22
CC4
SOFTWARE
ARG D:216 , NAG D:702 , HOH D:1238
BINDING SITE FOR RESIDUE NAG D 703
23
CC5
SOFTWARE
GLN D:406 , ASN D:410 , SER D:412 , ILE D:413
BINDING SITE FOR RESIDUE NAG D 704
24
CC6
SOFTWARE
ALA D:199 , PHE D:200 , GLN D:203 , HIS D:207 , PHE D:210 , LYS D:211 , THR D:212 , HIS D:214 , ASN D:382 , TYR D:385 , HIS D:386 , HIS D:388 , LEU D:391 , ALA D:450 , GLN D:454 , HOH D:815
BINDING SITE FOR RESIDUE HEM D 705
25
CC7
SOFTWARE
GLU C:179 , ARG C:184 , ARG C:185 , ILE C:442 , GLN C:445 , LYS D:180 , ARG D:184 , ARG D:185 , ARG D:438 , GLU D:486 , GLU D:490
BINDING SITE FOR RESIDUE BOG D 706
26
CC8
SOFTWARE
TYR D:115 , SER D:119 , ARG D:120 , VAL D:349 , LEU D:352 , SER D:353 , TYR D:355 , TRP D:387 , MET D:522 , VAL D:523 , GLY D:526 , ALA D:527 , SER D:530 , HOH D:1159
BINDING SITE FOR RESIDUE IXP D 707
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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