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4OPP
Asym. Unit
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Asym.Unit (123 KB)
Biol.Unit 1 (119 KB)
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Title
:
CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF CAMEL PEPTIDOGLYCAN RECOGNITION PROTEIN PGRP-S WITH 11-CYCLOHEXYLUNDECANOIC ACID AND N-ACETYLGLUCOSAMINE AT 2.30 A RESOLUTION
Authors
:
S. Yamini, P. Sharma, S. P. Yadav, M. Sinha, A. Bhushan, P. Kaur, S. Sharm T. P. Singh
Date
:
06 Feb 14 (Deposition) - 05 Mar 14 (Release) - 05 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Immune Response, Secreted, Antimicrobial, Pgrp-S, Antibiotic, Peptidoglycan Binding, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
S. Yamini, P. Sharma, S. P. Yadav, M. Sinha, A. Bhushan, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of The Ternary Complex Of Camel Peptidoglycan Recognition Protein Pgrp-S With 11-Cyclohexylundecanoic Acid And N- Acetylglucosamine At 2. 30 A Resolution
To Be Published
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: 11-CYCLOHEXYLUNDECANOIC ACID (11Za)
1b: 11-CYCLOHEXYLUNDECANOIC ACID (11Zb)
2a: GLYCEROL (GOLa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4a: L(+)-TARTARIC ACID (TLAa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
11Z
2
Ligand/Ion
11-CYCLOHEXYLUNDECANOIC ACID
2
GOL
1
Ligand/Ion
GLYCEROL
3
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
TLA
1
Ligand/Ion
L(+)-TARTARIC ACID
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:125 , ASN A:126 , HOH A:318 , HOH A:342 , PRO B:3 , PRO B:4 , ALA B:5 , CYS B:6 , LEU B:134 , ARG D:31 , ARG D:138
BINDING SITE FOR RESIDUE 11Z B 201
2
AC2
SOFTWARE
TRP C:66 , LYS C:90 , GLY C:91 , ALA C:92 , PRO C:96 , ASN C:99 , HOH C:414 , HOH C:415 , PRO D:96 , THR D:97 , GLN D:150
BINDING SITE FOR RESIDUE NAG C 201
3
AC3
SOFTWARE
HIS C:37 , ALA C:39 , THR C:152 , LEU C:153 , HIS D:37 , ALA D:39 , THR D:152 , LEU D:153 , SER D:154 , GOL D:202 , HOH D:306
BINDING SITE FOR RESIDUE TLA D 201
4
AC4
SOFTWARE
PRO C:151 , THR C:152 , HIS D:37 , THR D:38 , ALA D:39 , TYR D:71 , HIS D:146 , TLA D:201 , HOH D:350
BINDING SITE FOR RESIDUE GOL D 202
5
AC5
SOFTWARE
THR C:97 , GLN C:150 , HOH C:328 , HOH C:407 , GLU D:24 , TRP D:66 , CYS D:67 , ARG D:85 , GLY D:91 , ALA D:92 , GLY D:95 , ASN D:99 , HOH D:376
BINDING SITE FOR RESIDUE 11Z D 203
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4oppa_ (A:)
1b: SCOP_d4oppb_ (B:)
1c: SCOP_d4oppc_ (C:)
1d: SCOP_d4oppd_ (D:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
N-acetylmuramoyl-L-alanine amidase-like
(59)
Superfamily
:
N-acetylmuramoyl-L-alanine amidase-like
(59)
Family
:
N-acetylmuramoyl-L-alanine amidase-like
(53)
Protein domain
:
automated matches
(30)
Camel (Camelus dromedarius) [TaxId: 9838]
(27)
1a
d4oppa_
A:
1b
d4oppb_
B:
1c
d4oppc_
C:
1d
d4oppd_
D:
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CATH Domains
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Pfam Domains
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Asym.Unit (123 KB)
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