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4OPO
Asym. Unit
Info
Asym.Unit (311 KB)
Biol.Unit 1 (305 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN SAGA4 IN COMPLEX WITH HBGA TYPE LEB (TETRAGLYCAN)
Authors
:
B. K. Singh, G. S. Hansman
Date
:
06 Feb 14 (Deposition) - 17 Dec 14 (Release) - 11 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Norovirus, Viral Capsid Protein, Histo Blood Group Antigen (Hbga), Protruding Domain, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. K. Singh, M. M. Leuthold, G. S. Hansman
Human Noroviruses' Fondness For Histo-Blood Group Antigens.
J. Virol. V. 89 2024 2015
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
3c: ALPHA-L-FUCOSE (FUCc)
3d: ALPHA-L-FUCOSE (FUCd)
4a: BETA-D-GALACTOSE (GALa)
4b: BETA-D-GALACTOSE (GALb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
FUC
4
Ligand/Ion
ALPHA-L-FUCOSE
4
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
5
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:505 , LEU A:507 , VAL A:508 , MET A:530
BINDING SITE FOR RESIDUE ACT A 601
02
AC2
SOFTWARE
THR A:267 , ASP A:269 , VAL A:271 , LYS A:493 , EDO A:603 , HOH A:834 , HOH A:955 , HOH A:969
BINDING SITE FOR RESIDUE EDO A 602
03
AC3
SOFTWARE
THR A:267 , LYS A:493 , SER A:494 , EDO A:602 , HOH A:870 , HOH A:955
BINDING SITE FOR RESIDUE EDO A 603
04
AC4
SOFTWARE
HIS B:505 , LEU B:507 , VAL B:508 , HOH B:907
BINDING SITE FOR RESIDUE ACT B 601
05
AC5
SOFTWARE
LEU B:272 , LEU B:273 , GLY B:274 , THR B:276 , LEU B:321 , HOH B:1036 , HOH B:1067
BINDING SITE FOR RESIDUE EDO B 602
06
AC6
SOFTWARE
GLU A:235 , GLU A:236 , HOH A:1003 , GLN B:277 , LEU B:278 , LEU B:306 , HOH B:784
BINDING SITE FOR RESIDUE EDO B 603
07
AC7
SOFTWARE
HOH A:922 , HOH A:1082 , GLN B:260 , TRP B:403 , VAL B:404 , LEU B:405
BINDING SITE FOR RESIDUE EDO B 604
08
AC8
SOFTWARE
GLN B:390 , ASP B:391 , GLY B:392 , SER B:393 , GLY B:443 , NAG B:606 , GAL B:607 , HOH B:1125
BINDING SITE FOR RESIDUE FUC B 605
09
AC9
SOFTWARE
GLY B:392 , FUC B:605 , GAL B:607 , FUC B:608 , HOH B:888 , HOH B:939 , HOH B:940 , HOH B:944 , HOH B:960
BINDING SITE FOR RESIDUE NAG B 606
10
BC1
SOFTWARE
SER B:442 , TRP B:520 , FUC B:605 , NAG B:606 , FUC B:608 , HOH B:931 , HOH B:941 , HOH B:942 , HOH B:1125
BINDING SITE FOR RESIDUE GAL B 607
11
BC2
SOFTWARE
SER A:343 , THR A:344 , ARG A:345 , ASP A:374 , SER B:442 , GLY B:443 , NAG B:606 , GAL B:607 , HOH B:764 , HOH B:1124
BINDING SITE FOR RESIDUE FUC B 608
12
BC3
SOFTWARE
GLN A:390 , ASP A:391 , GLY A:392 , SER A:442 , SER A:519 , HOH A:901 , HOH A:916 , HOH A:917 , NAG B:610 , GAL B:611
BINDING SITE FOR RESIDUE FUC B 609
13
BC4
SOFTWARE
FUC B:609 , GAL B:611 , FUC B:612 , HOH B:886 , HOH B:938
BINDING SITE FOR RESIDUE NAG B 610
14
BC5
SOFTWARE
SER A:442 , HOH A:1006 , FUC B:609 , NAG B:610 , FUC B:612 , HOH B:886 , HOH B:945 , HOH B:1039
BINDING SITE FOR RESIDUE GAL B 611
15
BC6
SOFTWARE
SER A:442 , GLY A:443 , THR B:344 , ARG B:345 , ASP B:374 , NAG B:610 , GAL B:611 , HOH B:1006 , HOH B:1074
BINDING SITE FOR RESIDUE FUC B 612
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (311 KB)
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