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4OJR
Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HIV-1 INTEGRASE CATALYTIC DOMAIN WITH GSK1264
Authors
:
K. Gupta, T. Brady, B. Dyer, Y. Hwang, F. Male, R. T. Nolte, L. Wang, E. Vel J. Jeffrey, G. Van Duyne, F. D. Bushman
Date
:
21 Jan 14 (Deposition) - 11 Jun 14 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Viral Dna Integration, Dna Binding, Ledgf Binding, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Gupta, T. Brady, B. M. Dyer, N. Malani, Y. Hwang, F. Male, R. T. Nolte, L. Wang, E. Velthuisen, J. Jeffrey, G. D. Van Duyne, F. D. Bushman
Allosteric Inhibition Of Human Immunodeficiency Virus Integrase: Late Block During Viral Replication And Abnormal Multimerization Involving Specific Protein Domains.
J. Biol. Chem. V. 289 20477 2014
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: (2S)-TERT-BUTOXY[4-(8-FLUORO-5-MET... (2SQa)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
3a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
2SQ
1
Ligand/Ion
(2S)-TERT-BUTOXY[4-(8-FLUORO-5-METHYL-3,4-DIHYDRO-2H-CHROMEN-6-YL)-2-METHYL-1-OXO-1,2-DIHYDROISOQUINOLIN-3-YL]ETHANOIC ACID
2
CAC
2
Ligand/Ion
CACODYLATE ION
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:95 , LEU A:102 , THR A:125 , ALA A:128 , ALA A:129 , TRP A:132 , GLN A:168 , ALA A:169 , GLU A:170 , HIS A:171 , THR A:174 , HOH A:452
BINDING SITE FOR RESIDUE 2SQ A 301
2
AC2
SOFTWARE
CYS A:65 , GLU A:92 , THR A:97 , ASN A:120
BINDING SITE FOR RESIDUE CAC A 302
3
AC3
SOFTWARE
CYS A:130 , ILE A:135 , LYS A:136 , GLN A:137
BINDING SITE FOR RESIDUE CAC A 303
4
AC4
SOFTWARE
LYS A:71 , ARG A:166 , GLU A:170 , HIS A:171 , LEU A:172 , HOH A:409 , HOH A:497
BINDING SITE FOR RESIDUE SO4 A 304
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (54 KB)
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