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4OIR
Asym. Unit
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Asym.Unit (596 KB)
Biol.Unit 1 (587 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX SOAKED WITH GE23077 AND RIFAMYCIN SV
Authors
:
Y. Zhang, R. H. Ebright, E. Arnold
Date
:
20 Jan 14 (Deposition) - 07 May 14 (Release) - 14 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A,B,C,D,E,F,G,H,I (1x)
Keywords
:
Ge23077, Transcription Inhibitor, Transcription Open Complex, Transcription Initiation Complex, Rifamycin Sv, I Site, I+1 Site, Rna Polymerase, Dna/Rna/Ntp Binding, Polymerization Of Ribonucleotides, Nucleoid, Transcription, Transferase-Antibiotic Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhang, D. Degen, M. X. Ho, E. Sineva, K. Y. Ebright, Y. W. Ebright, V. Mekler, H. Vahedian-Movahed, Y. Feng, R. Yin, S. Tuske, H. Irschik, R. Jansen, S. Maffioli, S. Donadio, E. Arnold, R. H. Ebright
Ge23077 Binds To The Rna Polymerase 'I' And 'I+1' Sites And Prevents The Binding Of Initiating Nucleotides.
Elife V. 3 02450 2014
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Hetero Components
(11, 15)
Info
All Hetero Components
01a: D-ISOSERINE (0QZa)
02a: 3-AMINO-D-ALANINE (2RAa)
03a: D-ALLOTHREONINE (2TLa)
04a: D-SERINE (DSNa)
05a: D-VALINE (DVAa)
06a: 2-AMINOPROPANEDIOIC ACID (FGLa)
07a: (2Z)-2-METHYLBUT-2-ENOIC ACID (MB8a)
08a: MAGNESIUM ION (MGa)
08b: MAGNESIUM ION (MGb)
08c: MAGNESIUM ION (MGc)
08d: MAGNESIUM ION (MGd)
09a: BETA,GAMMA-DIHYDROXYGLUTAMINE (R2Ta)
10a: RIFAMYCIN SV (RFVa)
11a: ZINC ION (ZNa)
11b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0QZ
1
OTHER
D-ISOSERINE
2
2RA
1
Mod. Amino Acid
3-AMINO-D-ALANINE
3
2TL
1
OTHER
D-ALLOTHREONINE
4
DSN
1
OTHER
D-SERINE
5
DVA
1
OTHER
D-VALINE
6
FGL
1
Mod. Amino Acid
2-AMINOPROPANEDIOIC ACID
7
MB8
1
Ligand/Ion
(2Z)-2-METHYLBUT-2-ENOIC ACID
8
MG
4
Ligand/Ion
MAGNESIUM ION
9
R2T
1
OTHER
BETA,GAMMA-DIHYDROXYGLUTAMINE
10
RFV
1
Ligand/Ion
RIFAMYCIN SV
11
ZN
2
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU B:154 , ASP B:168 , LYS D:840
BINDING SITE FOR RESIDUE MG B 401
2
AC2
SOFTWARE
GLN C:390 , SER C:392 , GLN C:393 , PHE C:394 , ARG C:405 , HIS C:406 , ARG C:409 , SER C:411 , ARG C:420 , ASN C:448 , ILE C:452 , ASP F:323
BINDING SITE FOR RESIDUE RFV C 1201
3
AC3
SOFTWARE
CYS D:1112 , CYS D:1194 , CYS D:1201 , CYS D:1204
BINDING SITE FOR RESIDUE ZN D 2001
4
AC4
SOFTWARE
CYS D:58 , CYS D:60 , CYS D:73 , CYS D:76
BINDING SITE FOR RESIDUE ZN D 2002
5
AC5
SOFTWARE
ASP D:739 , ASP D:741 , ASP D:743 , HOH D:2104 , HOH D:2105 , HOH D:2106
BINDING SITE FOR RESIDUE MG D 2003
6
AC6
SOFTWARE
TRP D:897 , ILE D:900
BINDING SITE FOR RESIDUE MG D 2004
7
AC7
SOFTWARE
ALA F:292 , GLY F:296 , TRP F:299
BINDING SITE FOR RESIDUE MG F 2001
8
AC8
SOFTWARE
THR A:54 , ARG A:146 , ILE A:158 , PHE A:171 , ALA B:8 , PRO B:9 , GLU B:29 , ARG B:189 , GLU C:445 , GLY C:446 , ARG C:557 , MET C:560 , ASN C:563 , GLN C:567 , LYS C:838 , LYS C:846 , HOH D:2107 , DG G:17
BINDING SITE FOR GE23077
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (596 KB)
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