PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4OIM
Biol. Unit 1
Info
Asym.Unit (102 KB)
Biol.Unit 1 (374 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS INHA IN COMPLEX WITH INHIBITOR PT119 IN 2.4 M ACETATE
Authors
:
H. J. Li, P. Pan, C. T. Lai, N. Liu, M. Garcia-Diaz, C. Simmerling, P. J. To
Date
:
20 Jan 14 (Deposition) - 23 Apr 14 (Release) - 23 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Inhibition, High-Concentration Acetate, Slow-Onset Inhibition, Substrate Binding Loop Conformational Heterogeneity, Oxidoreductase- Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Pan, S. E. Knudson, G. R. Bommineni, H. J. Li, C. T. Lai, N. Liu, M. Garcia-Diaz, C. Simmerling, S. S. Patil, R. A. Slayden, P. J. Tonge
Time-Dependent Diaryl Ether Inhibitors Of Inha: Structure-Activity Relationship Studies Of Enzyme Inhibition, Antibacterial Activity, And In Vivo Efficacy.
Chemmedchem V. 9 776 2014
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 52)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
2a: 2-(2-CYANOPHENOXY)-5-HEXYLPHENOL (JUSa)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
44
Ligand/Ion
ACETATE ION
2
JUS
4
Ligand/Ion
2-(2-CYANOPHENOXY)-5-HEXYLPHENOL
3
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:14 , ILE A:15 , ILE A:16 , SER A:20 , ILE A:21 , PHE A:41 , LEU A:63 , ASP A:64 , VAL A:65 , SER A:94 , ILE A:95 , GLY A:96 , ILE A:122 , MET A:147 , ASP A:148 , LYS A:165 , ALA A:191 , GLY A:192 , PRO A:193 , ILE A:194 , THR A:196 , LEU A:197 , ALA A:198 , JUS A:302 , ACT A:303 , HOH A:413 , HOH A:423 , HOH A:428 , HOH A:433 , HOH A:435 , HOH A:461
BINDING SITE FOR RESIDUE NAD A 301
02
AC2
SOFTWARE
GLY A:96 , PHE A:97 , MET A:103 , PRO A:156 , TYR A:158 , MET A:161 , LYS A:165 , ALA A:198 , MET A:199 , ILE A:202 , NAD A:301 , ACT A:304
BINDING SITE FOR RESIDUE JUS A 302
03
AC3
SOFTWARE
PHE A:41 , GLN A:66 , PHE A:97 , ILE A:122 , NAD A:301
BINDING SITE FOR RESIDUE ACT A 303
04
AC4
SOFTWARE
PHE A:97 , MET A:98 , MET A:103 , ALA A:201 , JUS A:302
BINDING SITE FOR RESIDUE ACT A 304
05
AC5
SOFTWARE
ARG A:43 , ALA A:206 , GLY A:208 , GLY A:212 , ALA A:213
BINDING SITE FOR RESIDUE ACT A 305
06
AC6
SOFTWARE
SER A:19 , HIS A:24 , ILE A:194 , LYS A:233 , ALA A:235
BINDING SITE FOR RESIDUE ACT A 306
07
AC7
SOFTWARE
ARG A:9 , ASN A:86 , LYS A:87 , ASN A:139
BINDING SITE FOR RESIDUE ACT A 307
08
AC8
SOFTWARE
LYS A:181
BINDING SITE FOR RESIDUE ACT A 308
09
AC9
SOFTWARE
ARG A:77 , ACT A:310
BINDING SITE FOR RESIDUE ACT A 309
10
BC1
SOFTWARE
LEU A:61 , GLU A:62 , ARG A:77 , ACT A:309
BINDING SITE FOR RESIDUE ACT A 310
11
BC2
SOFTWARE
LYS A:181 , TYR A:182 , GLY A:183
BINDING SITE FOR RESIDUE ACT A 311
12
BC3
SOFTWARE
ILE A:228 , GLY A:229 , TRP A:230 , ACT A:313
BINDING SITE FOR RESIDUE ACT A 312
13
BC4
SOFTWARE
ASP A:223 , TRP A:230 , ACT A:312
BINDING SITE FOR RESIDUE ACT A 313
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (102 KB)
Header - Asym.Unit
Biol.Unit 1 (374 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4OIM
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help