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Biol. Unit 2
Info
Asym.Unit (123 KB)
Biol.Unit 1 (57 KB)
Biol.Unit 2 (56 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF RACEMIC NON-GLYCOSYLATED CHEMOKINE SER-CCL1
Authors
:
R. Okamoto, K. Mandal, M. R. Sawaya, Y. Kajihara, T. O. Yeates, S. B. H. Ke
Date
:
19 Jan 14 (Deposition) - 07 May 14 (Release) - 21 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Chemical Protein Synthesis, Racemic Protein Crystallography, Glycoprotein, Chemokine, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Okamoto, K. Mandal, M. R. Sawaya, Y. Kajihara, T. O. Yeates, S. B. Ken
(Quasi-)Racemic X-Ray Structures Of Glycosylated And Non-Glycosylated Forms Of The Chemokine Ser-Ccl1 Prepared B Total Chemical Synthesis.
Angew. Chem. Int. Ed. Engl. V. 53 5194 2014
[
close entry info
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Hetero Components
(20, 144)
Info
All Hetero Components
01a: D-ALANINE (DALa)
01b: D-ALANINE (DALb)
01c: D-ALANINE (DALc)
01d: D-ALANINE (DALd)
01e: D-ALANINE (DALe)
01f: D-ALANINE (DALf)
01g: D-ALANINE (DALg)
01h: D-ALANINE (DALh)
02a: D-ARGININE (DARa)
02b: D-ARGININE (DARb)
02c: D-ARGININE (DARc)
02d: D-ARGININE (DARd)
02e: D-ARGININE (DARe)
02f: D-ARGININE (DARf)
02g: D-ARGININE (DARg)
02h: D-ARGININE (DARh)
02i: D-ARGININE (DARi)
02j: D-ARGININE (DARj)
02k: D-ARGININE (DARk)
02l: D-ARGININE (DARl)
02m: D-ARGININE (DARm)
02n: D-ARGININE (DARn)
02o: D-ARGININE (DARo)
02p: D-ARGININE (DARp)
03a: D-ASPARTIC ACID (DASa)
03b: D-ASPARTIC ACID (DASb)
04a: D-CYSTEINE (DCYa)
04b: D-CYSTEINE (DCYb)
04c: D-CYSTEINE (DCYc)
04d: D-CYSTEINE (DCYd)
04e: D-CYSTEINE (DCYe)
04f: D-CYSTEINE (DCYf)
04g: D-CYSTEINE (DCYg)
04h: D-CYSTEINE (DCYh)
04i: D-CYSTEINE (DCYi)
04j: D-CYSTEINE (DCYj)
04k: D-CYSTEINE (DCYk)
04l: D-CYSTEINE (DCYl)
05a: D-GLUTAMIC ACID (DGLa)
05b: D-GLUTAMIC ACID (DGLb)
05c: D-GLUTAMIC ACID (DGLc)
05d: D-GLUTAMIC ACID (DGLd)
05e: D-GLUTAMIC ACID (DGLe)
05f: D-GLUTAMIC ACID (DGLf)
05g: D-GLUTAMIC ACID (DGLg)
05h: D-GLUTAMIC ACID (DGLh)
06a: D-GLUTAMINE (DGNa)
06b: D-GLUTAMINE (DGNb)
06c: D-GLUTAMINE (DGNc)
06d: D-GLUTAMINE (DGNd)
07a: D-HISTIDINE (DHIa)
07b: D-HISTIDINE (DHIb)
07c: D-HISTIDINE (DHIc)
07d: D-HISTIDINE (DHId)
08a: D-ISOLEUCINE (DILa)
08b: D-ISOLEUCINE (DILb)
08c: D-ISOLEUCINE (DILc)
08d: D-ISOLEUCINE (DILd)
08e: D-ISOLEUCINE (DILe)
08f: D-ISOLEUCINE (DILf)
08g: D-ISOLEUCINE (DILg)
08h: D-ISOLEUCINE (DILh)
09a: D-LEUCINE (DLEa)
09b: D-LEUCINE (DLEb)
09c: D-LEUCINE (DLEc)
09d: D-LEUCINE (DLEd)
09e: D-LEUCINE (DLEe)
09f: D-LEUCINE (DLEf)
09g: D-LEUCINE (DLEg)
09h: D-LEUCINE (DLEh)
09i: D-LEUCINE (DLEi)
09j: D-LEUCINE (DLEj)
09k: D-LEUCINE (DLEk)
09l: D-LEUCINE (DLEl)
10a: D-LYSINE (DLYa)
10b: D-LYSINE (DLYb)
10c: D-LYSINE (DLYc)
10d: D-LYSINE (DLYd)
10e: D-LYSINE (DLYe)
10f: D-LYSINE (DLYf)
10g: D-LYSINE (DLYg)
10h: D-LYSINE (DLYh)
10i: D-LYSINE (DLYi)
10j: D-LYSINE (DLYj)
11a: D-PHENYLALANINE (DPNa)
11b: D-PHENYLALANINE (DPNb)
11c: D-PHENYLALANINE (DPNc)
11d: D-PHENYLALANINE (DPNd)
11e: D-PHENYLALANINE (DPNe)
11f: D-PHENYLALANINE (DPNf)
11g: D-PHENYLALANINE (DPNg)
11h: D-PHENYLALANINE (DPNh)
12a: D-PROLINE (DPRa)
12b: D-PROLINE (DPRb)
12c: D-PROLINE (DPRc)
12d: D-PROLINE (DPRd)
12e: D-PROLINE (DPRe)
12f: D-PROLINE (DPRf)
13a: D-ASPARAGINE (DSGa)
13b: D-ASPARAGINE (DSGb)
13c: D-ASPARAGINE (DSGc)
13d: D-ASPARAGINE (DSGd)
14a: D-SERINE (DSNa)
14b: D-SERINE (DSNb)
14c: D-SERINE (DSNc)
14d: D-SERINE (DSNd)
14e: D-SERINE (DSNe)
14f: D-SERINE (DSNf)
14g: D-SERINE (DSNg)
14h: D-SERINE (DSNh)
14i: D-SERINE (DSNi)
14j: D-SERINE (DSNj)
14k: D-SERINE (DSNk)
14l: D-SERINE (DSNl)
15a: D-THREONINE (DTHa)
15b: D-THREONINE (DTHb)
15c: D-THREONINE (DTHc)
15d: D-THREONINE (DTHd)
16a: D-TRYPTOPHAN (DTRa)
16b: D-TRYPTOPHAN (DTRb)
17a: D-TYROSINE (DTYa)
17b: D-TYROSINE (DTYb)
18a: D-VALINE (DVAa)
18b: D-VALINE (DVAb)
18c: D-VALINE (DVAc)
18d: D-VALINE (DVAd)
18e: D-VALINE (DVAe)
18f: D-VALINE (DVAf)
19a: D-METHIONINE (MEDa)
19b: D-METHIONINE (MEDb)
20a: SULFATE ION (SO4a)
20aa: SULFATE ION (SO4aa)
20ab: SULFATE ION (SO4ab)
20ac: SULFATE ION (SO4ac)
20ad: SULFATE ION (SO4ad)
20ae: SULFATE ION (SO4ae)
20b: SULFATE ION (SO4b)
20c: SULFATE ION (SO4c)
20d: SULFATE ION (SO4d)
20e: SULFATE ION (SO4e)
20f: SULFATE ION (SO4f)
20g: SULFATE ION (SO4g)
20h: SULFATE ION (SO4h)
20i: SULFATE ION (SO4i)
20j: SULFATE ION (SO4j)
20k: SULFATE ION (SO4k)
20l: SULFATE ION (SO4l)
20m: SULFATE ION (SO4m)
20n: SULFATE ION (SO4n)
20o: SULFATE ION (SO4o)
20p: SULFATE ION (SO4p)
20q: SULFATE ION (SO4q)
20r: SULFATE ION (SO4r)
20s: SULFATE ION (SO4s)
20t: SULFATE ION (SO4t)
20u: SULFATE ION (SO4u)
20v: SULFATE ION (SO4v)
20w: SULFATE ION (SO4w)
20x: SULFATE ION (SO4x)
20y: SULFATE ION (SO4y)
20z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DAL
8
Mod. Amino Acid
D-ALANINE
2
DAR
16
Mod. Amino Acid
D-ARGININE
3
DAS
2
Mod. Amino Acid
D-ASPARTIC ACID
4
DCY
12
Mod. Amino Acid
D-CYSTEINE
5
DGL
8
Mod. Amino Acid
D-GLUTAMIC ACID
6
DGN
4
Mod. Amino Acid
D-GLUTAMINE
7
DHI
4
Mod. Amino Acid
D-HISTIDINE
8
DIL
8
Mod. Amino Acid
D-ISOLEUCINE
9
DLE
12
Mod. Amino Acid
D-LEUCINE
10
DLY
10
Mod. Amino Acid
D-LYSINE
11
DPN
8
Mod. Amino Acid
D-PHENYLALANINE
12
DPR
6
Mod. Amino Acid
D-PROLINE
13
DSG
4
Mod. Amino Acid
D-ASPARAGINE
14
DSN
12
Mod. Amino Acid
D-SERINE
15
DTH
4
Mod. Amino Acid
D-THREONINE
16
DTR
2
Mod. Amino Acid
D-TRYPTOPHAN
17
DTY
2
Mod. Amino Acid
D-TYROSINE
18
DVA
6
Mod. Amino Acid
D-VALINE
19
MED
2
Mod. Amino Acid
D-METHIONINE
20
SO4
14
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: OC3 (SOFTWARE)
02: OC6 (SOFTWARE)
03: OC7 (SOFTWARE)
04: PC1 (SOFTWARE)
05: PC5 (SOFTWARE)
06: PC6 (SOFTWARE)
07: PC7 (SOFTWARE)
08: PC8 (SOFTWARE)
09: PC9 (SOFTWARE)
10: QC1 (SOFTWARE)
11: QC2 (SOFTWARE)
12: QC3 (SOFTWARE)
13: QC4 (SOFTWARE)
14: QC5 (SOFTWARE)
15: QC6 (SOFTWARE)
16: QC7 (SOFTWARE)
17: QC8 (SOFTWARE)
18: QC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
OC3
SOFTWARE
THR A:55 , VAL A:56 , GLY A:57 , SO4 A:102 , HOH A:224 , DSN D:33
BINDING SITE FOR RESIDUE SO4 A 107
02
OC6
SOFTWARE
DAR C:67 , DAR D:67
BINDING SITE FOR RESIDUE SO4 B 101
03
OC7
SOFTWARE
SO4 A:104 , ARG B:10 , ARG B:29 , PRO B:70 , SER B:71 , SO4 B:103 , DAR D:67
BINDING SITE FOR RESIDUE SO4 B 102
04
PC1
SOFTWARE
GLY B:57 , TRP B:58 , ARG B:61 , HOH C:208
BINDING SITE FOR RESIDUE SO4 B 105
05
PC5
SOFTWARE
ARG A:67 , ARG B:67 , DLY C:72 , SO4 C:104 , DLY D:72
BINDING SITE FOR RESIDUE SO4 C 101
06
PC6
SOFTWARE
DSN C:32 , DSN C:33 , HOH C:222
BINDING SITE FOR RESIDUE SO4 C 102
07
PC7
SOFTWARE
DVA C:56 , GLY C:57 , DTR C:58 , DAR C:61 , HOH C:212 , HOH C:214
BINDING SITE FOR RESIDUE SO4 C 103
08
PC8
SOFTWARE
ARG A:67 , DAR C:10 , DSN C:71 , DLY C:72 , SO4 C:101
BINDING SITE FOR RESIDUE SO4 C 104
09
PC9
SOFTWARE
DGL C:19 , DAR C:61 , DHI C:62
BINDING SITE FOR RESIDUE SO4 C 105
10
QC1
SOFTWARE
DAR C:10 , DAR C:29 , DSG C:30 , DHI C:68 , HOH C:223
BINDING SITE FOR RESIDUE SO4 C 106
11
QC2
SOFTWARE
DAR C:73
BINDING SITE FOR RESIDUE SO4 C 107
12
QC3
SOFTWARE
ARG B:67 , DAR D:10 , DSN D:71 , DLY D:72 , SO4 D:102
BINDING SITE FOR RESIDUE SO4 D 101
13
QC4
SOFTWARE
DPN C:8 , DAR C:10 , DAR C:29 , DPN D:8 , DAR D:10 , DAR D:29 , SO4 D:101 , HOH D:224 , HOH D:228
BINDING SITE FOR RESIDUE SO4 D 102
14
QC5
SOFTWARE
DAR D:29 , DSG D:30 , DHI D:68
BINDING SITE FOR RESIDUE SO4 D 103
15
QC6
SOFTWARE
SER A:33 , SER A:36 , DVA D:56 , GLY D:57 , DTR D:58 , DAR D:61
BINDING SITE FOR RESIDUE SO4 D 104
16
QC7
SOFTWARE
DGL D:19 , DAR D:61 , DHI D:62
BINDING SITE FOR RESIDUE SO4 D 105
17
QC8
SOFTWARE
DAR D:10 , DSN D:32 , DSN D:33
BINDING SITE FOR RESIDUE SO4 D 106
18
QC9
SOFTWARE
DAR D:73
BINDING SITE FOR RESIDUE SO4 D 107
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (123 KB)
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