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4OIF
Asym. Unit
Info
Asym.Unit (387 KB)
Biol.Unit 1 (379 KB)
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(1)
Title
:
3D STRUCTURE OF GAN42B, A GH42 BETA-GALACTOSIDASE FROM G.
Authors
:
H. V. Solomon, O. Tabachnikov, H. Feinberg, Y. Shoham, G. Shoham
Date
:
19 Jan 14 (Deposition) - 04 Feb 15 (Release) - 04 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Beta-Galactosidase. Gan42B, Beta-Galactosidase, Gh42, Gan42B, Homo- Trimer, Hydolase, Carbohydrate/Sugar Binding, Intracellular, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. V. Solomon, O. Tabachnikov, H. Feinberg, L. Govada, N. E. Chayen, Y. Shoham, G. Shoham
Crystallization And Preliminary Crystallographic Analysis O Ganb, A Gh42 Intracellular Beta-Galactosidase From Geobacillus Stearothermophilus.
Acta Crystallogr. , Sect. F V. 69 1114 2013
[
close entry info
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Hetero Components
(2, 28)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
1v: GLYCEROL (GOLv)
1w: GLYCEROL (GOLw)
1x: GLYCEROL (GOLx)
1y: GLYCEROL (GOLy)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
25
Ligand/Ion
GLYCEROL
2
ZN
3
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:124 , CYS A:164 , CYS A:166 , CYS A:169
BINDING SITE FOR RESIDUE ZN A 701
02
AC2
SOFTWARE
SER A:327 , LEU A:328 , LYS A:365 , ASP A:379 , HOH A:836 , HOH A:959 , HOH A:1017 , GLU C:532 , THR C:533 , GOL C:703
BINDING SITE FOR RESIDUE GOL A 702
03
AC3
SOFTWARE
ARG A:120 , ASN A:158 , GLU A:159 , GLU A:323 , PHE A:361 , GLU A:371 , HOH A:816 , HOH A:896
BINDING SITE FOR RESIDUE GOL A 703
04
AC4
SOFTWARE
ARG A:120 , GLU A:159 , TRP A:331 , HOH A:951 , HOH A:1120
BINDING SITE FOR RESIDUE GOL A 704
05
AC5
SOFTWARE
TRP A:518 , HOH A:1037 , GOL B:703 , HOH B:934 , HOH B:989 , HOH B:1058 , HOH B:1330
BINDING SITE FOR RESIDUE GOL A 705
06
AC6
SOFTWARE
GLU A:452 , ARG A:453 , PHE A:622 , VAL A:623 , HIS A:625 , HOH A:940 , HOH A:949
BINDING SITE FOR RESIDUE GOL A 706
07
AC7
SOFTWARE
ARG A:438 , GLN A:441 , THR A:442 , GLN A:445 , ARG A:598 , HOH A:925
BINDING SITE FOR RESIDUE GOL A 707
08
AC8
SOFTWARE
PRO A:411 , ARG A:618 , PRO A:619 , HOH A:955 , HOH A:1195
BINDING SITE FOR RESIDUE GOL A 708
09
AC9
SOFTWARE
LYS A:42 , HOH A:945 , HOH A:1006 , ALA B:142 , GLU B:143 , GLY B:146 , ASP B:147 , HOH B:879
BINDING SITE FOR RESIDUE GOL A 709
10
BC1
SOFTWARE
CYS B:124 , CYS B:164 , CYS B:166 , CYS B:169
BINDING SITE FOR RESIDUE ZN B 701
11
BC2
SOFTWARE
ARG B:120 , ASN B:158 , GLU B:159 , GLU B:323 , PHE B:361 , GLU B:371 , HOH B:828 , HOH B:1077 , HOH B:1099
BINDING SITE FOR RESIDUE GOL B 702
12
BC3
SOFTWARE
ILE A:506 , GOL A:705 , HOH A:863 , HOH A:1003 , PHE B:373 , GOL B:704 , HOH B:972 , HOH B:989
BINDING SITE FOR RESIDUE GOL B 703
13
BC4
SOFTWARE
THR A:533 , SER B:327 , LEU B:328 , LYS B:365 , VAL B:388 , GOL B:703 , HOH B:893 , HOH B:1058 , HOH B:1244
BINDING SITE FOR RESIDUE GOL B 704
14
BC5
SOFTWARE
THR B:533 , GOL B:707 , HOH B:838 , HOH B:936 , HOH B:1011 , SER C:327 , LEU C:328 , LYS C:365 , ASP C:379
BINDING SITE FOR RESIDUE GOL B 705
15
BC6
SOFTWARE
ARG B:438 , GLN B:441 , THR B:442 , GLN B:445 , ARG B:598 , HOH B:1018 , HOH B:1036
BINDING SITE FOR RESIDUE GOL B 706
16
BC7
SOFTWARE
ILE B:506 , GOL B:705 , GOL B:708 , HOH B:931 , HOH B:945 , HOH B:1022 , PHE C:373 , HOH C:893
BINDING SITE FOR RESIDUE GOL B 707
17
BC8
SOFTWARE
GLY B:517 , TRP B:518 , GOL B:707 , HOH B:936 , HOH B:993 , HOH B:1022 , HOH B:1251 , HOH B:1337
BINDING SITE FOR RESIDUE GOL B 708
18
BC9
SOFTWARE
GLU B:452 , ARG B:453 , PHE B:622 , VAL B:623 , LYS B:624 , HIS B:625 , HOH B:1125 , HOH B:1170 , HOH B:1202
BINDING SITE FOR RESIDUE GOL B 709
19
CC1
SOFTWARE
LEU B:43 , GLN B:390 , LYS B:397 , HOH B:1174 , ASP C:76 , GOL C:705
BINDING SITE FOR RESIDUE GOL B 710
20
CC2
SOFTWARE
PRO B:538 , ARG B:539 , HOH B:985 , ASP C:293 , TRP C:294
BINDING SITE FOR RESIDUE GOL B 711
21
CC3
SOFTWARE
GLY A:214 , GLN B:115 , LEU B:116 , GLY B:118 , ASN B:122 , HOH B:996 , HOH B:1003 , HOH B:1109
BINDING SITE FOR RESIDUE GOL B 712
22
CC4
SOFTWARE
HIS B:464 , ASP B:465 , PHE B:466 , ARG B:487 , PHE B:491
BINDING SITE FOR RESIDUE GOL B 713
23
CC5
SOFTWARE
CYS C:124 , CYS C:164 , CYS C:166 , CYS C:169
BINDING SITE FOR RESIDUE ZN C 701
24
CC6
SOFTWARE
ARG C:120 , ASN C:158 , GLU C:159 , ASP C:285 , GLU C:323 , PHE C:361 , GLU C:371 , HOH C:815 , HOH C:996 , HOH C:1193
BINDING SITE FOR RESIDUE GOL C 702
25
CC7
SOFTWARE
PHE A:373 , GOL A:702 , HOH A:866 , ILE C:506 , HOH C:838 , HOH C:1058 , HOH C:1200
BINDING SITE FOR RESIDUE GOL C 703
26
CC8
SOFTWARE
ASP C:465 , PHE C:466 , SER C:467 , ARG C:487
BINDING SITE FOR RESIDUE GOL C 704
27
CC9
SOFTWARE
GLN B:390 , GLU B:394 , LYS B:397 , GOL B:710 , ASP C:72 , ARG C:144 , HOH C:1190
BINDING SITE FOR RESIDUE GOL C 705
28
DC1
SOFTWARE
ILE B:531 , GLU B:532 , ASP C:379 , SER C:386 , ARG C:387 , VAL C:388 , HOH C:896
BINDING SITE FOR RESIDUE GOL C 706
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
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Sorry, no Info available
[
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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