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4OIA
Biol. Unit 2
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Asym.Unit (274 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (134 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ICAM-5 D1-D4 ECTODOMAIN FRAGMENT, SPACE GROUP P4322
Authors
:
R. Recacha, D. Jimenez, L. Tian, R. Barredo, C. Ghamberg, J. M. Casasnov
Date
:
19 Jan 14 (Deposition) - 16 Jul 14 (Release) - 16 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Icam-5 Extracellular Domain, Igv, Inmunology, Icam-5, Brain, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Recacha, D. Jimenez, L. Tian, R. Barredo, C. G. Gahmberg, J. M. Casasnovas
Crystal Structures Of An Icam-5 Ectodomain Fragment Show Electrostatic-Based Homophilic Adhesions.
Acta Crystallogr. , Sect. D V. 70 1934 2014
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: 1,2-ETHANEDIOL (EDOa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
EDO
-1
Ligand/Ion
1,2-ETHANEDIOL
3
NAG
13
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(8, 8)
Info
All Sites
1: AC9 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
5: BC4 (SOFTWARE)
6: BC5 (SOFTWARE)
7: BC6 (SOFTWARE)
8: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC9
SOFTWARE
ASN B:23 , GLN B:46 , TRP B:51
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 23 RESIDUES 2301 TO 2302
2
BC1
SOFTWARE
ASN B:43 , GLN B:55
BINDING SITE FOR MONO-SACCHARIDE NAG B2303 BOUND TO ASN B 43
3
BC2
SOFTWARE
ASN B:106
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 106 RESIDUES 2304 TO 2305
4
BC3
SOFTWARE
GLY B:162 , ASN B:164
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 164 RESIDUES 2306 TO 2307
5
BC4
SOFTWARE
ASP B:90 , VAL B:92 , ASN B:183 , SER B:184 , ALA B:186
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 183 RESIDUES 2308 TO 2310
6
BC5
SOFTWARE
TYR B:232 , ASN B:272 , ASN B:279
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 272 RESIDUES 2311 TO 2312
7
BC6
SOFTWARE
GLN B:268 , ASN B:285
BINDING SITE FOR MONO-SACCHARIDE NAG B2313 BOUND TO ASN B 285
8
BC7
SOFTWARE
ASN B:366
BINDING SITE FOR MONO-SACCHARIDE NAG B2314 BOUND TO ASN B 366
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (274 KB)
Header - Asym.Unit
Biol.Unit 1 (134 KB)
Header - Biol.Unit 1
Biol.Unit 2 (134 KB)
Header - Biol.Unit 2
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