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4OGQ
Biol. Unit 1
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Asym.Unit (359 KB)
Biol.Unit 1 (674 KB)
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(1)
Title
:
INTERNAL LIPID ARCHITECTURE OF THE HETERO-OLIGOMERIC CYTOCHROME B6F COMPLEX
Authors
:
S. S. Hasan, W. A. Cramer
Date
:
16 Jan 14 (Deposition) - 14 May 14 (Release) - 23 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (2x)
Keywords
:
Electron Transfer, Plastocyanin, Cytochrome C6, Thylakoid Membrane, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. S. Hasan, W. A. Cramer
Internal Lipid Architecture Of The Hetero-Oligomeric Cytochrome B6F Complex.
Structure V. 22 1008 2014
[
close entry info
]
Hetero Components
(16, 60)
Info
All Hetero Components
01a: (2S)-3-(ALPHA-D-GALACTOPYRANOSYLOX... (1O2a)
02a: (1S,8E)-1-{[(2S)-1-HYDROXY-3-{[(1S... (2WAa)
03a: (1R)-1-{[(2S)-3-HYDROXY-2-{[(1R)-1... (2WDa)
04a: (1S,8E)-1-{[(2S)-3-HYDROXY-2-{[(1S... (2WMa)
05a: (1S,8E,1'R,8'Z)-1,1'-{[(2S)-3-HYDR... (3WMa)
06a: (1R)-2-(DODECANOYLOXY)-1-[(PHOSPHO... (7PHa)
06b: (1R)-2-(DODECANOYLOXY)-1-[(PHOSPHO... (7PHb)
06c: (1R)-2-(DODECANOYLOXY)-1-[(PHOSPHO... (7PHc)
06d: (1R)-2-(DODECANOYLOXY)-1-[(PHOSPHO... (7PHd)
06e: (1R)-2-(DODECANOYLOXY)-1-[(PHOSPHO... (7PHe)
07a: OCTADECANE (8K6a)
07b: OCTADECANE (8K6b)
07c: OCTADECANE (8K6c)
07d: OCTADECANE (8K6d)
08a: BETA-CAROTENE (BCRa)
09a: CADMIUM ION (CDa)
10a: CHLOROPHYLL A (CLAa)
11a: FE2/S2 (INORGANIC) CLUSTER (FESa)
12a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
12b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
12c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
12d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
13a: PENTADECANE (MYSa)
14a: N-OCTANE (OCTa)
15a: (7R,17E)-4-HYDROXY-N,N,N,7-TETRAME... (OPCa)
16a: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO... (SQDa)
17a: UNDECYL-MALTOSIDE (UMQa)
17b: UNDECYL-MALTOSIDE (UMQb)
17c: UNDECYL-MALTOSIDE (UMQc)
17d: UNDECYL-MALTOSIDE (UMQd)
17e: UNDECYL-MALTOSIDE (UMQe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1O2
2
Ligand/Ion
(2S)-3-(ALPHA-D-GALACTOPYRANOSYLOXY)-2-(HEXADECANOYLOXY)PROPYL (9Z)-OCTADEC-9-ENOATE
2
2WA
2
Ligand/Ion
(1S,8E)-1-{[(2S)-1-HYDROXY-3-{[(1S)-1-HYDROXYPENTADECYL]OXY}PROPAN-2-YL]OXY}HEPTADEC-8-EN-1-OL
3
2WD
2
Ligand/Ion
(1R)-1-{[(2S)-3-HYDROXY-2-{[(1R)-1-HYDROXYPENTYL]OXY}PROPYL]OXY}HEXAN-1-OL
4
2WM
2
Ligand/Ion
(1S,8E)-1-{[(2S)-3-HYDROXY-2-{[(1S)-1-HYDROXYOCTADECYL]OXY}PROPYL]OXY}OCTADEC-8-EN-1-OL
5
3WM
2
Ligand/Ion
(1S,8E,1'R,8'Z)-1,1'-{[(2S)-3-HYDROXYPROPANE-1,2-DIYL]BIS(OXY)}BISOCTADEC-8-EN-1-OL
6
7PH
10
Ligand/Ion
(1R)-2-(DODECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYLTETRADECANOATE
7
8K6
8
Ligand/Ion
OCTADECANE
8
BCR
2
Ligand/Ion
BETA-CAROTENE
9
CD
-1
Ligand/Ion
CADMIUM ION
10
CLA
2
Ligand/Ion
CHLOROPHYLL A
11
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
12
HEM
8
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
13
MYS
2
Ligand/Ion
PENTADECANE
14
OCT
2
Ligand/Ion
N-OCTANE
15
OPC
2
Ligand/Ion
(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE
16
SQD
2
Ligand/Ion
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
17
UMQ
10
Ligand/Ion
UNDECYL-MALTOSIDE
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:47 , PHE A:48 , GLY A:51 , MET A:54 , ARG A:83 , HIS A:86 , ARG A:87 , ALA A:90 , PHE A:131 , GLY A:135 , LEU A:138 , PRO A:139 , HIS A:187 , PHE A:189 , GLU B:78
BINDING SITE FOR RESIDUE HEM A 301
02
AC2
SOFTWARE
TYR A:34 , GLY A:37 , GLY A:38 , MET A:93 , HIS A:100 , VAL A:101 , ARG A:103 , VAL A:104 , GLY A:109 , ARG A:114 , THR A:117 , TRP A:118 , GLY A:121 , MET A:199 , HIS A:202 , PHE A:203 , ILE A:206 , ILE A:211 , SER A:212 , HEM A:303 , HOH A:401 , HOH A:406
BINDING SITE FOR RESIDUE HEM A 302
03
AC3
SOFTWARE
TYR A:34 , CYS A:35 , GLY A:38 , LEU A:41 , ARG A:207 , GLY A:210 , ILE A:211 , HEM A:302 , HOH A:401 , HOH A:410 , HOH A:416 , HOH A:417 , ASN B:25 , PHE B:40 , UMQ B:203 , ARG H:26
BINDING SITE FOR RESIDUE HEM A 303
04
AC4
SOFTWARE
TYR A:5 , UMQ B:201 , SQD D:204
BINDING SITE FOR RESIDUE UMQ A 304
05
AC5
SOFTWARE
VAL A:4 , TRP A:7 , PHE B:113
BINDING SITE FOR RESIDUE 7PH A 305
06
AC6
SOFTWARE
VAL A:197 , LEU A:200 , PHE A:201 , 8K6 A:307 , 8K6 A:308 , CLA B:204
BINDING SITE FOR RESIDUE 8K6 A 306
07
AC7
SOFTWARE
MET A:205 , LYS A:208 , 8K6 A:306
BINDING SITE FOR RESIDUE 8K6 A 307
08
AC8
SOFTWARE
SER A:130 , THR A:134 , LEU A:169 , ALA A:186 , 8K6 A:306
BINDING SITE FOR RESIDUE 8K6 A 308
09
AC9
SOFTWARE
LEU A:45 , PHE A:52 , LEU A:194 , PHE A:203 , VAL D:38
BINDING SITE FOR RESIDUE 2WM A 309
10
BC1
SOFTWARE
ALA A:18 , GLU A:19 , THR A:22 , UMQ A:304 , TRP B:32 , ASN C:288 , SQD D:204
BINDING SITE FOR RESIDUE UMQ B 201
11
BC2
SOFTWARE
LEU B:36 , PHE B:40 , PRO B:41
BINDING SITE FOR RESIDUE 8K6 B 202
12
BC3
SOFTWARE
LYS A:24 , ARG A:207 , HEM A:303 , ALA B:31 , LEU B:36 , PHE B:40 , PRO B:41 , HOH B:301
BINDING SITE FOR RESIDUE UMQ B 203
13
BC4
SOFTWARE
PHE A:102 , TYR A:105 , VAL A:129 , 8K6 A:306 , TYR B:80 , VAL B:84 , LEU B:108 , PHE B:133 , GLY B:136 , THR B:140 , OPC B:205 , HOH B:308 , HOH B:316 , 2WA F:101
BINDING SITE FOR RESIDUE CLA B 204
14
BC5
SOFTWARE
TYR A:105 , ALA B:100 , SER B:103 , VAL B:111 , ILE B:114 , GLU B:115 , ASN B:118 , ARG B:126 , PRO B:127 , VAL B:128 , ALA B:129 , CLA B:204 , HOH B:306
BINDING SITE FOR RESIDUE OPC B 205
15
BC6
SOFTWARE
PHE B:124 , THR B:130 , THR B:131 , LEU B:134 , PHE G:22
BINDING SITE FOR RESIDUE 7PH B 206
16
BC7
SOFTWARE
TYR C:1 , PRO C:2 , TRP C:4 , ALA C:5 , CYS C:22 , CYS C:25 , HIS C:26 , GLN C:60 , LEU C:70 , ASN C:71 , VAL C:72 , GLY C:73 , ALA C:74 , VAL C:75 , ASN C:154 , GLY C:156 , ARG C:157 , GLY C:158 , VAL C:160 , TYR C:161 , HOH C:435
BINDING SITE FOR RESIDUE HEM C 301
17
BC8
SOFTWARE
GLU A:75 , LYS C:140 , HIS C:143
BINDING SITE FOR RESIDUE CD C 302
18
BC9
SOFTWARE
ALA C:252 , ASN C:253 , GLY C:256 , TRP C:257 , ALA C:260 , PHE E:10 , ILE H:3
BINDING SITE FOR RESIDUE 7PH C 303
19
CC1
SOFTWARE
GLY D:14 , PHE D:18 , LEU D:22 , LEU E:25
BINDING SITE FOR RESIDUE UMQ D 201
20
CC2
SOFTWARE
LEU A:168 , PHE D:42
BINDING SITE FOR RESIDUE MYS D 202
21
CC3
SOFTWARE
ASP C:251 , TRP C:257 , PHE C:261 , GLY D:33 , TYR D:36
BINDING SITE FOR RESIDUE 7PH D 203
22
CC4
SOFTWARE
UMQ A:304 , TRP B:32 , TYR B:38 , UMQ B:201 , HOH B:307 , LYS C:275 , ARG D:16 , ASN D:20 , PHE D:24 , GLY D:25 , THR D:28 , GLY D:29
BINDING SITE FOR RESIDUE SQD D 204
23
CC5
SOFTWARE
CYS D:108 , HIS D:110 , LEU D:111 , CYS D:126 , HIS D:129 , SER D:131
BINDING SITE FOR RESIDUE FES D 205
24
CC6
SOFTWARE
TYR D:36 , VAL D:39 , ILE D:43
BINDING SITE FOR RESIDUE 2WD D 206
25
CC7
SOFTWARE
CYS A:43 , MET A:92 , MET A:96 , GLN C:38 , SER C:39 , ALA E:3 , ILE E:4 , TYR E:7 , ILE E:8 , GLU F:4 , 1O2 F:103 , THR H:5 , TRP H:8 , LEU H:12 , PHE H:15
BINDING SITE FOR RESIDUE 3WM E 101
26
CC8
SOFTWARE
CLA B:204 , MET F:1 , SER F:2 , LEU F:5 , ALA F:9 , PHE F:13 , VAL G:2 , ILE G:14
BINDING SITE FOR RESIDUE 2WA F 101
27
CC9
SOFTWARE
ASN F:7 , LEU F:10
BINDING SITE FOR RESIDUE OCT F 102
28
DC1
SOFTWARE
ILE E:8 , ALA E:12 , GLY E:16 , PHE E:23 , 3WM E:101 , LYS F:28 , ILE F:29 , GLY F:31
BINDING SITE FOR RESIDUE 1O2 F 103
29
DC2
SOFTWARE
PHE F:17 , TRP F:20 , ALA F:24 , TYR G:23 , BCR G:102
BINDING SITE FOR RESIDUE 7PH F 104
30
DC3
SOFTWARE
TYR G:26 , TYR G:29 , LYS G:30
BINDING SITE FOR RESIDUE UMQ G 101
31
DC4
SOFTWARE
ILE A:32 , PHE A:33 , ILE A:39 , MET A:96 , ILE F:16 , PHE F:17 , TRP F:20 , 7PH F:104 , VAL G:16 , ALA G:19 , GLY G:20 , TYR G:23 , PHE H:15 , SER H:18 , ILE H:19
BINDING SITE FOR RESIDUE BCR G 102
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
(0, 0)
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