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4OGB
Biol. Unit 2
Info
Asym.Unit (239 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (61 KB)
Biol.Unit 4 (62 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 WITH COMPOUND 2
Authors
:
S. C. Feil, M. W. Parker
Date
:
15 Jan 14 (Deposition) - 21 Jan 15 (Release) - 21 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Catalytic Mechanism, Camp Hydrolysis, Hydrolase-Inhibitor Complex, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. L. Howard, J. L. Nankervis, S. C. Feil, D. T. Manallack, J. K. Holien, Z. Zhen, I. G. Jennings, B. M. Abbott, M. W. Parker, P. E. Thompson
The Pde Inhibition Profile Of Ly294002 And Tetrahydropyrany Analogues Reveals A Chromone Motif For The Development Of Pde Inhibitors
To Be Published
[
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: (2R)-8-(3,4-DIMETHOXYPHENYL)-6-MET... (2SRa)
1b: (2R)-8-(3,4-DIMETHOXYPHENYL)-6-MET... (2SRb)
1c: (2R)-8-(3,4-DIMETHOXYPHENYL)-6-MET... (2SRc)
1d: (2R)-8-(3,4-DIMETHOXYPHENYL)-6-MET... (2SRd)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
2e: DIMETHYL SULFOXIDE (DMSe)
2f: DIMETHYL SULFOXIDE (DMSf)
3a: 1,2-ETHANEDIOL (EDOa)
3aa: 1,2-ETHANEDIOL (EDOaa)
3ab: 1,2-ETHANEDIOL (EDOab)
3ac: 1,2-ETHANEDIOL (EDOac)
3ad: 1,2-ETHANEDIOL (EDOad)
3ae: 1,2-ETHANEDIOL (EDOae)
3af: 1,2-ETHANEDIOL (EDOaf)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
4a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2SR
1
Ligand/Ion
(2R)-8-(3,4-DIMETHOXYPHENYL)-6-METHYL-2-(TETRAHYDRO-2H-PYRAN-4-YL)-2H-CHROMEN-4-OL
2
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
3
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
4
EPE
-1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
ZN
-1
Ligand/Ion
ZINC ION
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]
Sites
(16, 16)
Info
All Sites
01: BC3 (SOFTWARE)
02: BC6 (SOFTWARE)
03: BC7 (SOFTWARE)
04: BC8 (SOFTWARE)
05: BC9 (SOFTWARE)
06: CC1 (SOFTWARE)
07: CC2 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
11: CC6 (SOFTWARE)
12: CC7 (SOFTWARE)
13: CC8 (SOFTWARE)
14: DC3 (SOFTWARE)
15: DC4 (SOFTWARE)
16: EC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
BC3
SOFTWARE
LYS A:262 , ILE A:265 , ASP A:266 , HOH A:633 , HOH B:616
BINDING SITE FOR RESIDUE EDO A 512
02
BC6
SOFTWARE
HIS B:160 , MET B:273 , LEU B:319 , MET B:357 , SER B:368 , GLN B:369 , PHE B:372 , DMS B:510 , HOH B:613
BINDING SITE FOR RESIDUE 2SR B 501
03
BC7
SOFTWARE
HIS B:164 , HIS B:200 , ASP B:201 , ASP B:318 , HOH B:617 , HOH B:690
BINDING SITE FOR RESIDUE ZN B 502
04
BC8
SOFTWARE
ASP B:201 , HOH B:603 , HOH B:606 , HOH B:609 , HOH B:617 , HOH B:689
BINDING SITE FOR RESIDUE ZN B 503
05
BC9
SOFTWARE
SER B:208 , PHE B:340 , PRO B:356 , CYS B:358 , HOH B:692
BINDING SITE FOR RESIDUE EDO B 504
06
CC1
SOFTWARE
PHE B:107 , GLN B:331 , ASP B:334 , ARG B:335
BINDING SITE FOR RESIDUE EDO B 505
07
CC2
SOFTWARE
GLN A:258 , ASN B:214 , EDO B:507 , HOH B:625 , SER D:294 , SER D:295
BINDING SITE FOR RESIDUE EDO B 506
08
CC3
SOFTWARE
PHE B:211 , ASN B:214 , GLU B:347 , MET B:352 , GLU B:353 , SER B:355 , EDO B:506 , HOH B:625
BINDING SITE FOR RESIDUE EDO B 507
09
CC4
SOFTWARE
ALA B:183
BINDING SITE FOR RESIDUE EDO B 508
10
CC5
SOFTWARE
LYS B:101 , TRP B:102 , GLY B:103 , LEU B:104 , VAL B:106 , ASP B:167 , GLN B:170 , LYS B:324
BINDING SITE FOR RESIDUE EDO B 509
11
CC6
SOFTWARE
TYR B:159 , ASN B:321 , PRO B:322 , THR B:333 , PHE B:372 , 2SR B:501
BINDING SITE FOR RESIDUE DMS B 510
12
CC7
SOFTWARE
ASP B:140
BINDING SITE FOR RESIDUE EDO B 511
13
CC8
SOFTWARE
GLU B:349 , ARG B:350 , ASP D:140 , ILE D:143 , THR D:144
BINDING SITE FOR RESIDUE DMS B 512
14
DC3
SOFTWARE
HIS B:389 , PRO B:390 , THR C:134 , PHE C:135 , ASN C:251 , GLN C:256
BINDING SITE FOR RESIDUE EDO C 504
15
DC4
SOFTWARE
PRO B:179 , LEU C:188 , LYS C:255
BINDING SITE FOR RESIDUE EDO C 505
16
EC4
SOFTWARE
PHE B:211 , THR B:215 , ARG B:350 , THR D:148 , HIS D:152 , GLU D:243 , HOH D:691
BINDING SITE FOR RESIDUE EDO D 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (239 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
Biol.Unit 3 (61 KB)
Header - Biol.Unit 3
Biol.Unit 4 (62 KB)
Header - Biol.Unit 4
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