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4OFY
Asym. Unit
Info
Asym.Unit (317 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (107 KB)
Biol.Unit 3 (107 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF SYG-1 D1-D2 AND SYG-2 D1-D4
Authors
:
E. Ozkan, K. C. Garcia
Date
:
15 Jan 14 (Deposition) - 19 Feb 14 (Release) - 19 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,F (1x)
Keywords
:
Immunoglobulin Superfamily, Cell Adhesion, Synaptogenesis, Protein Binding, N-Linked Glycosylation, Membrane, Extracellular, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Ozkan, P. H. Chia, R. R. Wang, N. Goriatcheva, D. Borek, Z. Otwinowski, T. Walz, K. Shen, K. C. Garcia
Extracellular Architecture Of The Syg-1/Syg-2 Adhesion Complex Instructs Synaptogenesis.
Cell(Cambridge, Mass. ) V. 156 482 2014
[
close entry info
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Hetero Components
(2, 31)
Info
All Hetero Components
1a: ETHYL MERCURY ION (EMCa)
1b: ETHYL MERCURY ION (EMCb)
1c: ETHYL MERCURY ION (EMCc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
2ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
2u: N-ACETYL-D-GLUCOSAMINE (NAGu)
2v: N-ACETYL-D-GLUCOSAMINE (NAGv)
2w: N-ACETYL-D-GLUCOSAMINE (NAGw)
2x: N-ACETYL-D-GLUCOSAMINE (NAGx)
2y: N-ACETYL-D-GLUCOSAMINE (NAGy)
2z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EMC
3
Ligand/Ion
ETHYL MERCURY ION
2
NAG
28
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN D:349 , CYS D:391
BINDING SITE FOR RESIDUE EMC D 1508
02
AC2
SOFTWARE
CYS E:391
BINDING SITE FOR RESIDUE EMC E 1508
03
AC3
SOFTWARE
CYS F:391
BINDING SITE FOR RESIDUE EMC F 1508
04
AC4
SOFTWARE
SER A:92 , ASN A:93
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 93 RESIDUES 801 TO 802
05
AC5
SOFTWARE
SER B:92 , ASN B:93
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 93 RESIDUES 801 TO 802
06
AC6
SOFTWARE
SER C:92 , ASN C:93
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 93 RESIDUES 801 TO 802
07
AC7
SOFTWARE
ASN C:206 , THR E:225
BINDING SITE FOR MONO-SACCHARIDE NAG C 803 BOUND TO ASN C 206
08
AC8
SOFTWARE
ASN D:27
BINDING SITE FOR MONO-SACCHARIDE NAG D1501 BOUND TO ASN D 27
09
AC9
SOFTWARE
ASN D:149 , VAL D:195
BINDING SITE FOR MONO-SACCHARIDE NAG D1502 BOUND TO ASN D 149
10
BC1
SOFTWARE
HIS D:183 , ASN D:185
BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 185 RESIDUES 1503 TO 1504
11
BC2
SOFTWARE
THR D:221 , ASN D:223
BINDING SITE FOR MONO-SACCHARIDE NAG D1505 BOUND TO ASN D 223
12
BC3
SOFTWARE
ASN D:251 , ILE D:296
BINDING SITE FOR MONO-SACCHARIDE NAG D1506 BOUND TO ASN D 251
13
BC4
SOFTWARE
ASP D:266 , ARG D:275 , ASN D:311
BINDING SITE FOR MONO-SACCHARIDE NAG D1507 BOUND TO ASN D 311
14
BC5
SOFTWARE
ASN E:27
BINDING SITE FOR MONO-SACCHARIDE NAG E1501 BOUND TO ASN E 27
15
BC6
SOFTWARE
ASN E:149 , SER E:193 , VAL E:195
BINDING SITE FOR MONO-SACCHARIDE NAG E1502 BOUND TO ASN E 149
16
BC7
SOFTWARE
HIS E:183 , ASN E:185
BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 185 RESIDUES 1503 TO 1504
17
BC8
SOFTWARE
THR E:221 , ASN E:223
BINDING SITE FOR MONO-SACCHARIDE NAG E1505 BOUND TO ASN E 223
18
BC9
SOFTWARE
ASN E:251
BINDING SITE FOR MONO-SACCHARIDE NAG E1506 BOUND TO ASN E 251
19
CC1
SOFTWARE
ASP E:266 , ARG E:275 , ASN E:311
BINDING SITE FOR MONO-SACCHARIDE NAG E1507 BOUND TO ASN E 311
20
CC2
SOFTWARE
ASN F:27
BINDING SITE FOR MONO-SACCHARIDE NAG F1501 BOUND TO ASN F 27
21
CC3
SOFTWARE
ASN F:149 , THR F:151 , SER F:193 , VAL F:195
BINDING SITE FOR MONO-SACCHARIDE NAG F1502 BOUND TO ASN F 149
22
CC4
SOFTWARE
HIS F:183 , ASN F:185
BINDING SITE FOR CHAIN F OF SUGAR BOUND TO ASN F 185 RESIDUES 1503 TO 1504
23
CC5
SOFTWARE
THR F:221 , ASN F:223
BINDING SITE FOR MONO-SACCHARIDE NAG F1505 BOUND TO ASN F 223
24
CC6
SOFTWARE
ASN F:251 , THR F:253 , SER F:294
BINDING SITE FOR MONO-SACCHARIDE NAG F1506 BOUND TO ASN F 251
25
CC7
SOFTWARE
ASP F:266 , ASN F:311 , SER F:313
BINDING SITE FOR MONO-SACCHARIDE NAG F1507 BOUND TO ASN F 311
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain F
Asymmetric Unit 1
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Miscellaneous
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (317 KB)
Header - Asym.Unit
Biol.Unit 1 (107 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
Biol.Unit 3 (107 KB)
Header - Biol.Unit 3
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