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4OC5
Biol. Unit 1
Info
Asym.Unit (267 KB)
Biol.Unit 1 (516 KB)
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(1)
Title
:
X-RAY STRUCTURE OF OF HUMAN GLUTAMATE CARBOXYPEPTIDASE II (GCPII) IN A COMPLEX WITH CHIBZL, A UREA-BASED INHIBITOR N~2~-{[(S)-CARBOXY(4-HYDROXYPHENYL)METHYL]CARBAMOYL}-N~6~-(4-IODOBENZOYL)-L-LYSINE
Authors
:
J. Pavlicek, J. Ptacek, J. Cerny, Y. Byun, L. Skultetyova, M. Pomper, J. Lubkowski, C. Barinka
Date
:
08 Jan 14 (Deposition) - 21 May 14 (Release) - 21 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase, Metallopeptidase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Pavlicek, J. Ptacek, J. Cerny, Y. Byun, L. Skultetyova, M. G. Pomper J. Lubkowski, C. Barinka
Structural Characterization Of P1'-Diversified Urea-Based Inhibitors Of Glutamate Carboxypeptidase Ii.
Bioorg. Med. Chem. Lett. V. 24 2340 2014
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Hetero Components
(4, 28)
Info
All Hetero Components
1a: N~2~-{[(S)-CARBOXY(4-HYDROXYPHENYL... (2QMa)
2a: BETA-D-MANNOSE (BMAa)
3a: CALCIUM ION (CAa)
4a: CHLORIDE ION (CLa)
5a: ALPHA-D-MANNOSE (MANa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2QM
2
Ligand/Ion
N~2~-{[(S)-CARBOXY(4-HYDROXYPHENYL)METHYL]CARBAMOYL}-N~6~-(4-IODOBENZOYL)-L-LYSINE
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
CL
-1
Ligand/Ion
CHLORIDE ION
5
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
22
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:76 , GLN A:99 , NAG A:802 , HOH A:1137
BINDING SITE FOR RESIDUE NAG A 801
02
AC2
SOFTWARE
SER A:98 , NAG A:801 , HOH A:1144
BINDING SITE FOR RESIDUE NAG A 802
03
AC3
SOFTWARE
ASN A:121 , THR A:123 , HIS A:124 , THR A:349
BINDING SITE FOR RESIDUE NAG A 803
04
AC4
SOFTWARE
TYR A:127 , GLU A:137 , ILE A:138 , ASN A:140 , NAG A:805
BINDING SITE FOR RESIDUE NAG A 804
05
AC5
SOFTWARE
NAG A:804
BINDING SITE FOR RESIDUE NAG A 805
06
AC6
SOFTWARE
ASN A:195 , SER A:197
BINDING SITE FOR RESIDUE NAG A 806
07
AC7
SOFTWARE
TRP A:246 , ASN A:459 , PHE A:565 , TYR A:566 , HOH A:978 , HOH A:1159 , HOH A:1360
BINDING SITE FOR RESIDUE NAG A 807
08
AC8
SOFTWARE
SER A:472 , ASN A:476 , PRO A:594 , NAG A:809
BINDING SITE FOR RESIDUE NAG A 808
09
AC9
SOFTWARE
GLN A:651 , NAG A:808 , HOH A:1370
BINDING SITE FOR RESIDUE NAG A 809
10
BC1
SOFTWARE
TYR A:277 , SER A:631 , SER A:634 , ASN A:638 , GLN A:740 , NAG A:811 , HOH A:1026 , HOH A:1060 , HOH A:1222
BINDING SITE FOR RESIDUE NAG A 810
11
BC2
SOFTWARE
NAG A:810 , BMA A:812
BINDING SITE FOR RESIDUE NAG A 811
12
BC3
SOFTWARE
HIS A:112 , GLU A:276 , ARG A:354 , NAG A:811 , MAN A:813 , HOH A:1356 , HOH A:1357
BINDING SITE FOR RESIDUE BMA A 812
13
BC4
SOFTWARE
PHE A:235 , LYS A:240 , SER A:241 , GLU A:276 , BMA A:812 , HOH A:1088 , HOH A:1220 , HOH A:1223 , HOH A:1352
BINDING SITE FOR RESIDUE MAN A 813
14
BC5
SOFTWARE
ASP A:387 , GLU A:425 , HIS A:553 , ZN A:815 , 2QM A:818 , HOH A:1387
BINDING SITE FOR RESIDUE ZN A 814
15
BC6
SOFTWARE
HIS A:377 , ASP A:387 , GLU A:424 , GLU A:425 , ASP A:453 , ZN A:814 , HOH A:1387
BINDING SITE FOR RESIDUE ZN A 815
16
BC7
SOFTWARE
THR A:269 , TYR A:272 , GLU A:433 , GLU A:436 , HOH A:906
BINDING SITE FOR RESIDUE CA A 816
17
BC8
SOFTWARE
ASN A:451 , ASP A:453 , ARG A:534 , ARG A:536
BINDING SITE FOR RESIDUE CL A 817
18
BC9
SOFTWARE
PHE A:209 , ARG A:210 , ASN A:257 , GLU A:424 , GLU A:425 , GLY A:427 , LEU A:428 , ARG A:463 , ASP A:465 , GLY A:518 , ASN A:519 , ARG A:534 , ARG A:536 , PHE A:546 , TYR A:552 , HIS A:553 , LYS A:699 , TYR A:700 , ZN A:814 , HOH A:909 , HOH A:1072 , HOH A:1387 , HOH A:1388 , HOH A:1389 , HOH A:1396
BINDING SITE FOR RESIDUE 2QM A 818
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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Asym.Unit (267 KB)
Header - Asym.Unit
Biol.Unit 1 (516 KB)
Header - Biol.Unit 1
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