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4OAK
Asym. Unit
Info
Asym.Unit (150 KB)
Biol.Unit 1 (142 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VANCOMYCIN RESISTANCE D,D-DIPEPTIDASE/D,D-PENTAPEPTIDASE VANXYC D59S MUTANT IN COMPLEX WITH D-ALANINE-D-ALANINE AND COPPER (II)
Authors
:
P. J. Stogios, E. Evdokimova, D. Meziane-Cherif, R. Di Leo, V. Yim, P. C A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date
:
04 Jan 14 (Deposition) - 15 Jan 14 (Release) - 14 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Center For Structural Genomics Of Infectious Diseases, Csgid, National Institute Of Allergy And Infectious Diseases, Niaid, Alpha+Beta Protein, Metallopeptidase, Hedgehog/Dd-Peptidase Fold, Merops M15B Subfamily, Zn2+-Dependent, Vancomycin Resistance, Antibiotic Resistance, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Meziane-Cherif, P. J. Stogios, E. Evdokimova, A. Savchenko, P. Courvalin
Structural Basis For The Evolution Of Vancomycin Resistance D, D-Peptidases.
Proc. Natl. Acad. Sci. Usa V. 111 5872 2014
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Hetero Components
(6, 20)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
3a: D-ALANINE (DALa)
3b: D-ALANINE (DALb)
3c: D-ALANINE (DALc)
3d: D-ALANINE (DALd)
4a: MAGNESIUM ION (MGa)
5a: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3a)
5b: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3b)
5c: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3c)
5d: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3d)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
2
CU
2
Ligand/Ion
COPPER (II) ION
3
DAL
4
Ligand/Ion
D-ALANINE
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
PE3
4
Ligand/Ion
3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL
6
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:95 , ASP A:102 , HIS A:156 , DAL A:202
BINDING SITE FOR RESIDUE CU A 201
02
AC2
SOFTWARE
GLU A:142 , ASP A:143 , LYS A:144 , GLN A:145 , SER A:151 , TYR A:152 , HOH A:431
BINDING SITE FOR RESIDUE SO4 A 204
03
AC3
SOFTWARE
GLU A:66 , HOH A:326 , HOH A:352 , HOH A:415 , GLU B:66 , HOH B:420
BINDING SITE FOR RESIDUE MG A 205
04
AC4
SOFTWARE
ASP B:112
BINDING SITE FOR RESIDUE CL A 206
05
AC5
SOFTWARE
ARG A:69 , HOH B:393
BINDING SITE FOR RESIDUE CL A 207
06
AC6
SOFTWARE
THR A:63
BINDING SITE FOR RESIDUE CL A 208
07
AC7
SOFTWARE
HIS A:11 , HOH A:349
BINDING SITE FOR RESIDUE CL A 209
08
AC8
SOFTWARE
PHE A:189 , HOH A:465 , HIS B:179 , ALA B:183
BINDING SITE FOR RESIDUE PE3 A 210
09
AC9
SOFTWARE
HIS A:179 , ALA A:183 , HOH A:456 , PHE B:189
BINDING SITE FOR RESIDUE PE3 A 211
10
BC1
SOFTWARE
HIS B:95 , ASP B:102 , HIS B:156 , DAL B:202
BINDING SITE FOR RESIDUE CU B 201
11
BC2
SOFTWARE
PHE B:86 , HIS B:95 , ASP B:102 , ILE B:114 , TRP B:155 , HIS B:156 , CU B:201 , DAL B:203
BINDING SITE FOR RESIDUE DAL B 202
12
BC3
SOFTWARE
ARG B:62 , GLN B:67 , PHE B:86 , ALA B:88 , SER B:93 , HIS B:95 , TYR B:140 , GLU B:153 , DAL B:202 , HOH B:301
BINDING SITE FOR RESIDUE DAL B 203
13
BC4
SOFTWARE
HIS A:21 , LEU A:22 , ARG B:68 , ARG B:69 , HOH B:328
BINDING SITE FOR RESIDUE SO4 B 204
14
BC5
SOFTWARE
THR A:63 , HOH A:352 , THR B:63 , LYS B:65 , ARG B:69 , HOH B:326
BINDING SITE FOR RESIDUE SO4 B 205
15
BC6
SOFTWARE
HIS B:11
BINDING SITE FOR RESIDUE CL B 206
16
BC7
SOFTWARE
ASP B:143
BINDING SITE FOR RESIDUE CL B 207
17
BC8
SOFTWARE
MET B:1 , PRO B:20 , HIS B:21 , GLN B:35
BINDING SITE FOR RESIDUE PE3 B 208
18
BC9
SOFTWARE
TRP B:173 , GLU B:177 , ASP B:180
BINDING SITE FOR RESIDUE PE3 B 209
19
CC1
SOFTWARE
GLN A:67 , PHE A:86 , ALA A:88 , SER A:93 , HIS A:95 , ASP A:102 , GLU A:153 , TRP A:155 , HIS A:156 , CU A:201 , HOH A:301
BINDING SITE FOR LINKED RESIDUES A 202 to 203
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Asymmetric Unit 1
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