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4OA4
Asym. Unit
Info
Asym.Unit (646 KB)
Biol.Unit 1 (161 KB)
Biol.Unit 2 (163 KB)
Biol.Unit 3 (162 KB)
Biol.Unit 4 (160 KB)
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Title
:
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM SHEWANELLA LOIHICA PV-4 (SHEW_1446), TARGET EFI-510273, WITH BOUND SUCCINATE
Authors
:
M. W. Vetting, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, S. Sojitr M. Stead, J. D. Attonito, A. Scott Glenn, S. Chowdhury, B. Evans, B. Hi J. Love, R. D. Seidel, H. J. Imker, J. A. Gerlt, S. C. Almo, Enzyme Funct Initiative (Efi)
Date
:
03 Jan 14 (Deposition) - 05 Feb 14 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Trap Periplasmic Solute Binding Family, Enzyme Function Initiative, Efi, Structural Genomics, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. W. Vetting, N. Al-Obaidi, S. Zhao, B. San Francisco, J. Kim, D. J. Wichelecki, J. T. Bouvier, J. O. Solbiati, H. Vu, X. Zhang, D. A. Rodionov, J. D. Love, B. S. Hillerich, R. D. Seidel, R. J. Quinn, A. L. Osterman, J. E. Cronan, M. P. Jacobson, J. A. Gerlt, S. C. Almo
Experimental Strategies For Functional Annotation And Metabolism Discovery: Targeted Screening Of Solute Binding Proteins And Unbiased Panning Of Metabolomes.
Biochemistry V. 54 909 2015
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Hetero Components
(3, 41)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: SUCCINIC ACID (SINa)
3b: SUCCINIC ACID (SINb)
3c: SUCCINIC ACID (SINc)
3d: SUCCINIC ACID (SINd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
9
Ligand/Ion
CHLORIDE ION
2
MSE
28
Mod. Amino Acid
SELENOMETHIONINE
3
SIN
4
Ligand/Ion
SUCCINIC ACID
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:41 , VAL A:42 , LYS A:48 , LYS A:101 , ARG A:176 , MSE A:178 , PHE A:199 , ASN A:216 , ASN A:220 , TYR A:243 , HOH A:504 , HOH A:519
BINDING SITE FOR RESIDUE SIN A 401
02
AC2
SOFTWARE
VAL A:42 , ALA A:43 , ASN A:220 , SER A:223 , LYS A:224
BINDING SITE FOR RESIDUE CL A 402
03
AC3
SOFTWARE
SER A:75 , GLY A:79 , ASP A:80 , SER A:200 , HOH A:749
BINDING SITE FOR RESIDUE CL A 403
04
AC4
SOFTWARE
GLN A:129 , GLN A:134 , TYR A:150 , HOH A:567 , HOH A:786
BINDING SITE FOR RESIDUE CL A 404
05
AC5
SOFTWARE
VAL B:41 , VAL B:42 , LYS B:48 , LYS B:101 , ARG B:176 , MSE B:178 , PHE B:199 , ASN B:216 , ASN B:220 , TYR B:243 , HOH B:501 , HOH B:512
BINDING SITE FOR RESIDUE SIN B 401
06
AC6
SOFTWARE
GLN B:129 , GLN B:134 , TYR B:150
BINDING SITE FOR RESIDUE CL B 402
07
AC7
SOFTWARE
SER B:75 , GLY B:79 , ASP B:80 , PHE B:199 , SER B:200 , HOH B:592
BINDING SITE FOR RESIDUE CL B 403
08
AC8
SOFTWARE
VAL C:41 , VAL C:42 , LYS C:48 , LYS C:101 , ARG C:176 , MSE C:178 , PHE C:199 , ASN C:216 , ASN C:220 , TYR C:243 , HOH C:505 , HOH C:511
BINDING SITE FOR RESIDUE SIN C 401
09
AC9
SOFTWARE
SER C:75 , ASP C:80 , SER C:200 , HOH C:720
BINDING SITE FOR RESIDUE CL C 402
10
BC1
SOFTWARE
GLN C:129 , GLN C:134 , TYR C:150
BINDING SITE FOR RESIDUE CL C 403
11
BC2
SOFTWARE
VAL D:41 , VAL D:42 , LYS D:48 , LYS D:101 , ARG D:176 , MSE D:178 , PHE D:199 , ASN D:216 , ASN D:220 , TYR D:243 , HOH D:521 , HOH D:529
BINDING SITE FOR RESIDUE SIN D 401
12
BC3
SOFTWARE
SER D:75 , ASP D:80 , SER D:200 , HOH D:609
BINDING SITE FOR RESIDUE CL D 402
13
BC4
SOFTWARE
GLN D:129 , GLN D:134 , GLY D:149 , TYR D:150 , HOH D:595
BINDING SITE FOR RESIDUE CL D 403
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (646 KB)
Header - Asym.Unit
Biol.Unit 1 (161 KB)
Header - Biol.Unit 1
Biol.Unit 2 (163 KB)
Header - Biol.Unit 2
Biol.Unit 3 (162 KB)
Header - Biol.Unit 3
Biol.Unit 4 (160 KB)
Header - Biol.Unit 4
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