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4O94
Asym. Unit
Info
Asym.Unit (611 KB)
Biol.Unit 1 (153 KB)
Biol.Unit 2 (153 KB)
Biol.Unit 3 (153 KB)
Biol.Unit 4 (153 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RHODOPSEUDOMONAS PALUSTRIS HAA2 (RPB_3329), TARGET EFI-510223, WITH BOUND SUCCINATE
Authors
:
M. W. Vetting, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, S. Sojitr M. Stead, J. D. Attonito, A. Scott Glenn, S. Chowdhury, B. Evans, B. Hi J. Love, R. D. Seidel, H. J. Imker, J. A. Gerlt, S. C. Almo, Enzyme Funct Initiative (Efi)
Date
:
01 Jan 14 (Deposition) - 22 Jan 14 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Trap Periplasmic Solute Binding Family, Enzyme Function Initiative, Efi, Structural Genomics, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. W. Vetting, N. Al-Obaidi, S. Zhao, B. San Francisco, J. Kim, D. J. Wichelecki, J. T. Bouvier, J. O. Solbiati, H. Vu, X. Zhang, D. A. Rodionov, J. D. Love, B. S. Hillerich, R. D. Seidel, R. J. Quinn, A. L. Osterman, J. E. Cronan, M. P. Jacobson, J. A. Gerlt, S. C. Almo
Experimental Strategies For Functional Annotation And Metabolism Discovery: Targeted Screening Of Solute Binding Proteins And Unbiased Panning Of Metabolomes.
Biochemistry V. 54 909 2015
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Hetero Components
(3, 47)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: SUCCINIC ACID (SINa)
3b: SUCCINIC ACID (SINb)
3c: SUCCINIC ACID (SINc)
3d: SUCCINIC ACID (SINd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
15
Ligand/Ion
CHLORIDE ION
2
MSE
28
Mod. Amino Acid
SELENOMETHIONINE
3
SIN
4
Ligand/Ion
SUCCINIC ACID
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:68 , GLY A:72 , ASP A:73 , SER A:193
BINDING SITE FOR RESIDUE CL A 401
02
AC2
SOFTWARE
GLN A:127 , TYR A:143 , HOH A:656
BINDING SITE FOR RESIDUE CL A 402
03
AC3
SOFTWARE
VAL A:34 , VAL A:35 , LYS A:41 , LYS A:94 , ARG A:169 , GLN A:171 , PHE A:192 , ASN A:209 , ASN A:213 , TYR A:236 , HOH A:501 , HOH A:548
BINDING SITE FOR RESIDUE SIN A 403
04
AC4
SOFTWARE
LYS B:49 , LYS B:61 , LYS C:49 , VAL C:64
BINDING SITE FOR RESIDUE CL B 401
05
AC5
SOFTWARE
MSE B:148 , HOH B:524 , HOH B:685
BINDING SITE FOR RESIDUE CL B 402
06
AC6
SOFTWARE
LYS B:124 , ASN B:154 , ARG B:155
BINDING SITE FOR RESIDUE CL B 403
07
AC7
SOFTWARE
SER B:68 , GLY B:72 , ASP B:73 , SER B:193 , HOH B:708
BINDING SITE FOR RESIDUE CL B 404
08
AC8
SOFTWARE
HIS B:291 , GLN B:292 , HOH B:569 , GLU D:303 , LYS D:306
BINDING SITE FOR RESIDUE CL B 405
09
AC9
SOFTWARE
VAL B:34 , VAL B:35 , LYS B:41 , LYS B:94 , ARG B:169 , GLN B:171 , PHE B:192 , ASN B:209 , ASN B:213 , TYR B:236 , HOH B:503 , HOH B:554
BINDING SITE FOR RESIDUE SIN B 406
10
BC1
SOFTWARE
MSE C:148 , HOH C:502
BINDING SITE FOR RESIDUE CL C 401
11
BC2
SOFTWARE
SER C:32 , HIS C:33 , TYR C:65 , SER C:68 , GLN C:69 , LEU C:70 , PHE C:71
BINDING SITE FOR RESIDUE CL C 402
12
BC3
SOFTWARE
LYS B:49 , VAL B:64 , LYS C:49 , LYS C:61
BINDING SITE FOR RESIDUE CL C 403
13
BC4
SOFTWARE
GLY C:72 , LYS C:75
BINDING SITE FOR RESIDUE CL C 404
14
BC5
SOFTWARE
LYS C:124 , ASN C:154
BINDING SITE FOR RESIDUE CL C 405
15
BC6
SOFTWARE
VAL C:34 , VAL C:35 , LYS C:41 , LYS C:94 , ARG C:169 , GLN C:171 , PHE C:192 , ASN C:209 , ASN C:213 , TYR C:236 , HOH C:504 , HOH C:522
BINDING SITE FOR RESIDUE SIN C 406
16
BC7
SOFTWARE
SER D:68 , GLY D:72 , ASP D:73 , PHE D:192 , SER D:193
BINDING SITE FOR RESIDUE CL D 401
17
BC8
SOFTWARE
HIS D:33 , VAL D:34 , LYS D:41 , HOH D:509 , HOH D:515
BINDING SITE FOR RESIDUE CL D 402
18
BC9
SOFTWARE
ALA D:142 , TYR D:143 , HOH D:632
BINDING SITE FOR RESIDUE CL D 403
19
CC1
SOFTWARE
VAL D:34 , VAL D:35 , LYS D:41 , LYS D:94 , ARG D:169 , GLN D:171 , PHE D:192 , ASN D:209 , ASN D:213 , TYR D:236 , HOH D:521 , HOH D:541
BINDING SITE FOR RESIDUE SIN D 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
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Asym.Unit (611 KB)
Header - Asym.Unit
Biol.Unit 1 (153 KB)
Header - Biol.Unit 1
Biol.Unit 2 (153 KB)
Header - Biol.Unit 2
Biol.Unit 3 (153 KB)
Header - Biol.Unit 3
Biol.Unit 4 (153 KB)
Header - Biol.Unit 4
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