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4O5I
Biol. Unit 2
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Asym.Unit (1.9 MB)
Biol.Unit 1 (974 KB)
Biol.Unit 2 (977 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY F045-092 IN COMPLEX WITH A/VICTORIA/361/2011 (H3N2) INFLUENZA HEMAGGLUTININ
Authors
:
P. S. Lee, I. A. Wilson
Date
:
19 Dec 13 (Deposition) - 16 Apr 14 (Release) - 14 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
6.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,M,N,O,P,Q,R (1x)
Biol. Unit 2: G,H,I,J,K,L,S,T,U,V,W,X (1x)
Keywords
:
Immunoglobulin, Virus Attachment And Entry, Immune Recognition, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. S. Lee, N. Ohshima, R. L. Stanfield, W. Yu, Y. Iba, Y. Okuno, Y. Kurosawa, I. A. Wilson
Receptor Mimicry By Antibody F045-092 Facilitates Universal Binding To The H3 Subtype Of Influenza Virus.
Nat Commun V. 5 3614 2014
[
close entry info
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Hetero Components
(2, 49)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
1m: BETA-D-MANNOSE (BMAm)
1n: BETA-D-MANNOSE (BMAn)
1o: BETA-D-MANNOSE (BMAo)
1p: BETA-D-MANNOSE (BMAp)
1q: BETA-D-MANNOSE (BMAq)
1r: BETA-D-MANNOSE (BMAr)
1s: BETA-D-MANNOSE (BMAs)
1t: BETA-D-MANNOSE (BMAt)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
3ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
3al: N-ACETYL-D-GLUCOSAMINE (NAGal)
3am: N-ACETYL-D-GLUCOSAMINE (NAGam)
3an: N-ACETYL-D-GLUCOSAMINE (NAGan)
3ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
3ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
3aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
3ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
3as: N-ACETYL-D-GLUCOSAMINE (NAGas)
3at: N-ACETYL-D-GLUCOSAMINE (NAGat)
3au: N-ACETYL-D-GLUCOSAMINE (NAGau)
3av: N-ACETYL-D-GLUCOSAMINE (NAGav)
3aw: N-ACETYL-D-GLUCOSAMINE (NAGaw)
3ax: N-ACETYL-D-GLUCOSAMINE (NAGax)
3ay: N-ACETYL-D-GLUCOSAMINE (NAGay)
3az: N-ACETYL-D-GLUCOSAMINE (NAGaz)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3ba: N-ACETYL-D-GLUCOSAMINE (NAGba)
3bb: N-ACETYL-D-GLUCOSAMINE (NAGbb)
3bc: N-ACETYL-D-GLUCOSAMINE (NAGbc)
3bd: N-ACETYL-D-GLUCOSAMINE (NAGbd)
3be: N-ACETYL-D-GLUCOSAMINE (NAGbe)
3bf: N-ACETYL-D-GLUCOSAMINE (NAGbf)
3bg: N-ACETYL-D-GLUCOSAMINE (NAGbg)
3bh: N-ACETYL-D-GLUCOSAMINE (NAGbh)
3bi: N-ACETYL-D-GLUCOSAMINE (NAGbi)
3bj: N-ACETYL-D-GLUCOSAMINE (NAGbj)
3bk: N-ACETYL-D-GLUCOSAMINE (NAGbk)
3bl: N-ACETYL-D-GLUCOSAMINE (NAGbl)
3bm: N-ACETYL-D-GLUCOSAMINE (NAGbm)
3bn: N-ACETYL-D-GLUCOSAMINE (NAGbn)
3bo: N-ACETYL-D-GLUCOSAMINE (NAGbo)
3bp: N-ACETYL-D-GLUCOSAMINE (NAGbp)
3bq: N-ACETYL-D-GLUCOSAMINE (NAGbq)
3br: N-ACETYL-D-GLUCOSAMINE (NAGbr)
3bs: N-ACETYL-D-GLUCOSAMINE (NAGbs)
3bt: N-ACETYL-D-GLUCOSAMINE (NAGbt)
3bu: N-ACETYL-D-GLUCOSAMINE (NAGbu)
3bv: N-ACETYL-D-GLUCOSAMINE (NAGbv)
3bw: N-ACETYL-D-GLUCOSAMINE (NAGbw)
3bx: N-ACETYL-D-GLUCOSAMINE (NAGbx)
3by: N-ACETYL-D-GLUCOSAMINE (NAGby)
3bz: N-ACETYL-D-GLUCOSAMINE (NAGbz)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3ca: N-ACETYL-D-GLUCOSAMINE (NAGca)
3cb: N-ACETYL-D-GLUCOSAMINE (NAGcb)
3cc: N-ACETYL-D-GLUCOSAMINE (NAGcc)
3cd: N-ACETYL-D-GLUCOSAMINE (NAGcd)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
8
Ligand/Ion
BETA-D-MANNOSE
2
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
41
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(49, 49)
Info
All Sites
01: HC2 (SOFTWARE)
02: HC3 (SOFTWARE)
03: HC4 (SOFTWARE)
04: HC5 (SOFTWARE)
05: HC6 (SOFTWARE)
06: HC7 (SOFTWARE)
07: HC8 (SOFTWARE)
08: HC9 (SOFTWARE)
09: IC1 (SOFTWARE)
10: IC2 (SOFTWARE)
11: IC3 (SOFTWARE)
12: IC4 (SOFTWARE)
13: IC5 (SOFTWARE)
14: IC6 (SOFTWARE)
15: IC7 (SOFTWARE)
16: IC8 (SOFTWARE)
17: IC9 (SOFTWARE)
18: JC1 (SOFTWARE)
19: JC2 (SOFTWARE)
20: JC3 (SOFTWARE)
21: JC4 (SOFTWARE)
22: JC5 (SOFTWARE)
23: JC6 (SOFTWARE)
24: JC7 (SOFTWARE)
25: JC8 (SOFTWARE)
26: JC9 (SOFTWARE)
27: KC1 (SOFTWARE)
28: KC2 (SOFTWARE)
29: KC3 (SOFTWARE)
30: KC4 (SOFTWARE)
31: KC5 (SOFTWARE)
32: KC6 (SOFTWARE)
33: KC7 (SOFTWARE)
34: KC8 (SOFTWARE)
35: KC9 (SOFTWARE)
36: LC1 (SOFTWARE)
37: LC2 (SOFTWARE)
38: LC3 (SOFTWARE)
39: LC4 (SOFTWARE)
40: LC5 (SOFTWARE)
41: LC6 (SOFTWARE)
42: LC7 (SOFTWARE)
43: LC8 (SOFTWARE)
44: LC9 (SOFTWARE)
45: MC1 (SOFTWARE)
46: MC2 (SOFTWARE)
47: MC3 (SOFTWARE)
48: MC4 (SOFTWARE)
49: MC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
HC2
SOFTWARE
ASN G:38 , THR G:318 , NAG G:402
BINDING SITE FOR RESIDUE NAG G 401
02
HC3
SOFTWARE
NAG G:401 , LEU H:52
BINDING SITE FOR RESIDUE NAG G 402
03
HC4
SOFTWARE
GLU G:62 , ASN G:63 , TYR G:94
BINDING SITE FOR RESIDUE NAG G 403
04
HC5
SOFTWARE
GLN G:132 , ASN G:133 , ARG G:255 , NAG G:405 , SER S:100
BINDING SITE FOR RESIDUE NAG G 404
05
HC6
SOFTWARE
ASN G:122 , NAG G:404
BINDING SITE FOR RESIDUE NAG G 405
06
HC7
SOFTWARE
ASN G:165 , NAG G:407 , SER K:219 , ARG K:222
BINDING SITE FOR RESIDUE NAG G 406
07
HC8
SOFTWARE
NAG G:406 , ARG K:222
BINDING SITE FOR RESIDUE NAG G 407
08
HC9
SOFTWARE
ASN G:285 , ASN G:296 , VAL G:297 , ASN G:298 , NAG G:409
BINDING SITE FOR RESIDUE NAG G 408
09
IC1
SOFTWARE
NAG G:408 , BMA G:410
BINDING SITE FOR RESIDUE NAG G 409
10
IC2
SOFTWARE
NAG G:409
BINDING SITE FOR RESIDUE BMA G 410
11
IC3
SOFTWARE
ASN G:126 , THR G:128
BINDING SITE FOR RESIDUE NAG G 411
12
IC4
SOFTWARE
ALA G:163 , ARG G:201 , THR G:203 , ASN G:246 , NAG G:413 , ILE K:217
BINDING SITE FOR RESIDUE NAG G 412
13
IC5
SOFTWARE
NAG G:412 , BMA G:414 , ASP K:188
BINDING SITE FOR RESIDUE NAG G 413
14
IC6
SOFTWARE
NAG G:413
BINDING SITE FOR RESIDUE BMA G 414
15
IC7
SOFTWARE
GLY H:150 , ARG H:153 , ASN H:154
BINDING SITE FOR RESIDUE NAG H 201
16
IC8
SOFTWARE
ASN I:38 , THR I:318 , NAG I:402
BINDING SITE FOR RESIDUE NAG I 401
17
IC9
SOFTWARE
NAG I:401
BINDING SITE FOR RESIDUE NAG I 402
18
JC1
SOFTWARE
ASN I:63 , LYS I:92 , TYR I:94 , NAG I:404
BINDING SITE FOR RESIDUE NAG I 403
19
JC2
SOFTWARE
NAG I:403
BINDING SITE FOR RESIDUE NAG I 404
20
JC3
SOFTWARE
GLN I:132 , ASN I:133 , ARG I:255 , NAG I:406 , SER U:100
BINDING SITE FOR RESIDUE NAG I 405
21
JC4
SOFTWARE
NAG I:405
BINDING SITE FOR RESIDUE NAG I 406
22
JC5
SOFTWARE
SER G:219 , ARG G:222 , ASN I:165 , NAG I:408
BINDING SITE FOR RESIDUE NAG I 407
23
JC6
SOFTWARE
ARG G:222 , NAG I:407 , BMA I:409
BINDING SITE FOR RESIDUE NAG I 408
24
JC7
SOFTWARE
NAG I:408
BINDING SITE FOR RESIDUE BMA I 409
25
JC8
SOFTWARE
ASN I:285 , ASN I:296 , VAL I:297 , NAG I:411
BINDING SITE FOR RESIDUE NAG I 410
26
JC9
SOFTWARE
NAG I:410 , BMA I:412
BINDING SITE FOR RESIDUE NAG I 411
27
KC1
SOFTWARE
NAG I:411
BINDING SITE FOR RESIDUE BMA I 412
28
KC2
SOFTWARE
ASN I:126 , THR I:128
BINDING SITE FOR RESIDUE NAG I 413
29
KC3
SOFTWARE
ILE G:217 , ALA I:163 , ARG I:201 , THR I:203 , ASN I:246 , NAG I:415
BINDING SITE FOR RESIDUE NAG I 414
30
KC4
SOFTWARE
ASP G:188 , NAG I:414 , BMA I:416
BINDING SITE FOR RESIDUE NAG I 415
31
KC5
SOFTWARE
NAG I:415
BINDING SITE FOR RESIDUE BMA I 416
32
KC6
SOFTWARE
ASN J:154
BINDING SITE FOR RESIDUE NAG J 201
33
KC7
SOFTWARE
ASN K:38 , THR K:318 , NAG K:402
BINDING SITE FOR RESIDUE NAG K 401
34
KC8
SOFTWARE
NAG K:401
BINDING SITE FOR RESIDUE NAG K 402
35
KC9
SOFTWARE
GLU K:62 , ASN K:63 , LYS K:92 , TYR K:94 , NAG K:404
BINDING SITE FOR RESIDUE NAG K 403
36
LC1
SOFTWARE
NAG K:403
BINDING SITE FOR RESIDUE NAG K 404
37
LC2
SOFTWARE
GLN K:132 , ASN K:133 , ARG K:255 , NAG K:406 , SER W:100
BINDING SITE FOR RESIDUE NAG K 405
38
LC3
SOFTWARE
NAG K:405 , BMA K:407
BINDING SITE FOR RESIDUE NAG K 406
39
LC4
SOFTWARE
NAG K:406
BINDING SITE FOR RESIDUE BMA K 407
40
LC5
SOFTWARE
SER I:219 , ARG I:222 , ASN K:165 , NAG K:409
BINDING SITE FOR RESIDUE NAG K 408
41
LC6
SOFTWARE
ARG I:222 , NAG K:408
BINDING SITE FOR RESIDUE NAG K 409
42
LC7
SOFTWARE
ASN K:285 , ASN K:296 , VAL K:297 , NAG K:411
BINDING SITE FOR RESIDUE NAG K 410
43
LC8
SOFTWARE
NAG K:410 , BMA K:412 , GLU L:69
BINDING SITE FOR RESIDUE NAG K 411
44
LC9
SOFTWARE
NAG K:411
BINDING SITE FOR RESIDUE BMA K 412
45
MC1
SOFTWARE
ASN K:126 , THR K:128
BINDING SITE FOR RESIDUE NAG K 413
46
MC2
SOFTWARE
ILE I:217 , ALA K:163 , ARG K:201 , ASN K:246 , THR K:248 , NAG K:415
BINDING SITE FOR RESIDUE NAG K 414
47
MC3
SOFTWARE
ASP I:188 , NAG K:414 , BMA K:416
BINDING SITE FOR RESIDUE NAG K 415
48
MC4
SOFTWARE
NAG K:415
BINDING SITE FOR RESIDUE BMA K 416
49
MC5
SOFTWARE
ASN L:154
BINDING SITE FOR RESIDUE NAG L 201
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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