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4O5I
Biol. Unit 1
Info
Asym.Unit (1.9 MB)
Biol.Unit 1 (974 KB)
Biol.Unit 2 (977 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY F045-092 IN COMPLEX WITH A/VICTORIA/361/2011 (H3N2) INFLUENZA HEMAGGLUTININ
Authors
:
P. S. Lee, I. A. Wilson
Date
:
19 Dec 13 (Deposition) - 16 Apr 14 (Release) - 14 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
6.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,M,N,O,P,Q,R (1x)
Biol. Unit 2: G,H,I,J,K,L,S,T,U,V,W,X (1x)
Keywords
:
Immunoglobulin, Virus Attachment And Entry, Immune Recognition, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. S. Lee, N. Ohshima, R. L. Stanfield, W. Yu, Y. Iba, Y. Okuno, Y. Kurosawa, I. A. Wilson
Receptor Mimicry By Antibody F045-092 Facilitates Universal Binding To The H3 Subtype Of Influenza Virus.
Nat Commun V. 5 3614 2014
[
close entry info
]
Hetero Components
(3, 64)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
1m: BETA-D-MANNOSE (BMAm)
1n: BETA-D-MANNOSE (BMAn)
1o: BETA-D-MANNOSE (BMAo)
1p: BETA-D-MANNOSE (BMAp)
1q: BETA-D-MANNOSE (BMAq)
1r: BETA-D-MANNOSE (BMAr)
1s: BETA-D-MANNOSE (BMAs)
1t: BETA-D-MANNOSE (BMAt)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
3ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
3al: N-ACETYL-D-GLUCOSAMINE (NAGal)
3am: N-ACETYL-D-GLUCOSAMINE (NAGam)
3an: N-ACETYL-D-GLUCOSAMINE (NAGan)
3ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
3ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
3aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
3ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
3as: N-ACETYL-D-GLUCOSAMINE (NAGas)
3at: N-ACETYL-D-GLUCOSAMINE (NAGat)
3au: N-ACETYL-D-GLUCOSAMINE (NAGau)
3av: N-ACETYL-D-GLUCOSAMINE (NAGav)
3aw: N-ACETYL-D-GLUCOSAMINE (NAGaw)
3ax: N-ACETYL-D-GLUCOSAMINE (NAGax)
3ay: N-ACETYL-D-GLUCOSAMINE (NAGay)
3az: N-ACETYL-D-GLUCOSAMINE (NAGaz)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3ba: N-ACETYL-D-GLUCOSAMINE (NAGba)
3bb: N-ACETYL-D-GLUCOSAMINE (NAGbb)
3bc: N-ACETYL-D-GLUCOSAMINE (NAGbc)
3bd: N-ACETYL-D-GLUCOSAMINE (NAGbd)
3be: N-ACETYL-D-GLUCOSAMINE (NAGbe)
3bf: N-ACETYL-D-GLUCOSAMINE (NAGbf)
3bg: N-ACETYL-D-GLUCOSAMINE (NAGbg)
3bh: N-ACETYL-D-GLUCOSAMINE (NAGbh)
3bi: N-ACETYL-D-GLUCOSAMINE (NAGbi)
3bj: N-ACETYL-D-GLUCOSAMINE (NAGbj)
3bk: N-ACETYL-D-GLUCOSAMINE (NAGbk)
3bl: N-ACETYL-D-GLUCOSAMINE (NAGbl)
3bm: N-ACETYL-D-GLUCOSAMINE (NAGbm)
3bn: N-ACETYL-D-GLUCOSAMINE (NAGbn)
3bo: N-ACETYL-D-GLUCOSAMINE (NAGbo)
3bp: N-ACETYL-D-GLUCOSAMINE (NAGbp)
3bq: N-ACETYL-D-GLUCOSAMINE (NAGbq)
3br: N-ACETYL-D-GLUCOSAMINE (NAGbr)
3bs: N-ACETYL-D-GLUCOSAMINE (NAGbs)
3bt: N-ACETYL-D-GLUCOSAMINE (NAGbt)
3bu: N-ACETYL-D-GLUCOSAMINE (NAGbu)
3bv: N-ACETYL-D-GLUCOSAMINE (NAGbv)
3bw: N-ACETYL-D-GLUCOSAMINE (NAGbw)
3bx: N-ACETYL-D-GLUCOSAMINE (NAGbx)
3by: N-ACETYL-D-GLUCOSAMINE (NAGby)
3bz: N-ACETYL-D-GLUCOSAMINE (NAGbz)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3ca: N-ACETYL-D-GLUCOSAMINE (NAGca)
3cb: N-ACETYL-D-GLUCOSAMINE (NAGcb)
3cc: N-ACETYL-D-GLUCOSAMINE (NAGcc)
3cd: N-ACETYL-D-GLUCOSAMINE (NAGcd)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
12
Ligand/Ion
BETA-D-MANNOSE
2
MAN
11
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
41
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(64, 64)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:38 , THR A:318 , NAG A:402
BINDING SITE FOR RESIDUE NAG A 401
02
AC2
SOFTWARE
NAG A:401 , BMA A:403 , ASN B:49 , LEU B:52
BINDING SITE FOR RESIDUE NAG A 402
03
AC3
SOFTWARE
NAG A:402
BINDING SITE FOR RESIDUE BMA A 403
04
AC4
SOFTWARE
GLU A:62 , ASN A:63 , TYR A:94 , NAG A:405
BINDING SITE FOR RESIDUE NAG A 404
05
AC5
SOFTWARE
NAG A:404
BINDING SITE FOR RESIDUE NAG A 405
06
AC6
SOFTWARE
GLN A:132 , ASN A:133 , ARG A:255 , NAG A:407
BINDING SITE FOR RESIDUE NAG A 406
07
AC7
SOFTWARE
NAG A:406
BINDING SITE FOR RESIDUE NAG A 407
08
AC8
SOFTWARE
ASN A:165 , NAG A:409 , SER E:219 , ARG E:222
BINDING SITE FOR RESIDUE NAG A 408
09
AC9
SOFTWARE
NAG A:408 , BMA A:410 , ARG E:222
BINDING SITE FOR RESIDUE NAG A 409
10
BC1
SOFTWARE
NAG A:409 , MAN A:411 , MAN A:412
BINDING SITE FOR RESIDUE BMA A 410
11
BC2
SOFTWARE
BMA A:410
BINDING SITE FOR RESIDUE MAN A 411
12
BC3
SOFTWARE
BMA A:410
BINDING SITE FOR RESIDUE MAN A 412
13
BC4
SOFTWARE
ASN A:285 , VAL A:297 , ASN A:298 , NAG A:414
BINDING SITE FOR RESIDUE NAG A 413
14
BC5
SOFTWARE
NAG A:413
BINDING SITE FOR RESIDUE NAG A 414
15
BC6
SOFTWARE
ALA A:163 , LEU A:164 , ARG A:201 , ASN A:246 , THR A:248 , NAG A:416 , ILE E:217
BINDING SITE FOR RESIDUE NAG A 415
16
BC7
SOFTWARE
NAG A:415
BINDING SITE FOR RESIDUE NAG A 416
17
BC8
SOFTWARE
ASN B:154
BINDING SITE FOR RESIDUE NAG B 201
18
BC9
SOFTWARE
ASN C:38 , THR C:318 , NAG C:402 , LEU D:52
BINDING SITE FOR RESIDUE NAG C 401
19
CC1
SOFTWARE
NAG C:401 , BMA C:403
BINDING SITE FOR RESIDUE NAG C 402
20
CC2
SOFTWARE
NAG C:402 , MAN C:404
BINDING SITE FOR RESIDUE BMA C 403
21
CC3
SOFTWARE
BMA C:403
BINDING SITE FOR RESIDUE MAN C 404
22
CC4
SOFTWARE
GLU C:62 , ASN C:63 , TYR C:94 , NAG C:406
BINDING SITE FOR RESIDUE NAG C 405
23
CC5
SOFTWARE
NAG C:405
BINDING SITE FOR RESIDUE NAG C 406
24
CC6
SOFTWARE
GLN C:132 , ASN C:133 , ARG C:255 , NAG C:408 , SER O:100
BINDING SITE FOR RESIDUE NAG C 407
25
CC7
SOFTWARE
NAG C:407 , BMA C:409
BINDING SITE FOR RESIDUE NAG C 408
26
CC8
SOFTWARE
NAG C:408 , MAN C:410
BINDING SITE FOR RESIDUE BMA C 409
27
CC9
SOFTWARE
BMA C:409
BINDING SITE FOR RESIDUE MAN C 410
28
DC1
SOFTWARE
SER A:219 , ASN C:165 , NAG C:412
BINDING SITE FOR RESIDUE NAG C 411
29
DC2
SOFTWARE
ARG A:222 , NAG C:411 , BMA C:413
BINDING SITE FOR RESIDUE NAG C 412
30
DC3
SOFTWARE
NAG C:412 , MAN C:414 , MAN C:415
BINDING SITE FOR RESIDUE BMA C 413
31
DC4
SOFTWARE
BMA C:413
BINDING SITE FOR RESIDUE MAN C 414
32
DC5
SOFTWARE
BMA C:413
BINDING SITE FOR RESIDUE MAN C 415
33
DC6
SOFTWARE
ASN C:285 , ASN C:298 , NAG C:417 , GLU D:69
BINDING SITE FOR RESIDUE NAG C 416
34
DC7
SOFTWARE
NAG C:416 , BMA C:418 , GLU D:69
BINDING SITE FOR RESIDUE NAG C 417
35
DC8
SOFTWARE
NAG C:417
BINDING SITE FOR RESIDUE BMA C 418
36
DC9
SOFTWARE
ASN C:126 , THR C:128
BINDING SITE FOR RESIDUE NAG C 419
37
EC1
SOFTWARE
ILE A:217 , ALA C:163 , ARG C:201 , THR C:203 , ASN C:246 , NAG C:421
BINDING SITE FOR RESIDUE NAG C 420
38
EC2
SOFTWARE
ASP A:188 , NAG C:420 , BMA C:422
BINDING SITE FOR RESIDUE NAG C 421
39
EC3
SOFTWARE
NAG C:421
BINDING SITE FOR RESIDUE BMA C 422
40
EC4
SOFTWARE
ASN D:154
BINDING SITE FOR RESIDUE NAG D 201
41
EC5
SOFTWARE
ASN E:38 , THR E:318 , NAG E:402
BINDING SITE FOR RESIDUE NAG E 401
42
EC6
SOFTWARE
NAG E:401 , BMA E:403 , MAN E:405
BINDING SITE FOR RESIDUE NAG E 402
43
EC7
SOFTWARE
NAG E:402 , MAN E:404 , MAN E:405
BINDING SITE FOR RESIDUE BMA E 403
44
EC8
SOFTWARE
BMA E:403 , GLN P:17
BINDING SITE FOR RESIDUE MAN E 404
45
EC9
SOFTWARE
NAG E:402 , BMA E:403 , ILE F:56
BINDING SITE FOR RESIDUE MAN E 405
46
FC1
SOFTWARE
GLU E:62 , ASN E:63 , TYR E:94 , NAG E:407
BINDING SITE FOR RESIDUE NAG E 406
47
FC2
SOFTWARE
NAG E:406 , BMA E:408
BINDING SITE FOR RESIDUE NAG E 407
48
FC3
SOFTWARE
NAG E:407
BINDING SITE FOR RESIDUE BMA E 408
49
FC4
SOFTWARE
GLN E:132 , ASN E:133 , ARG E:255 , NAG E:410
BINDING SITE FOR RESIDUE NAG E 409
50
FC5
SOFTWARE
NAG E:409 , BMA E:411
BINDING SITE FOR RESIDUE NAG E 410
51
FC6
SOFTWARE
NAG E:410 , MAN E:412
BINDING SITE FOR RESIDUE BMA E 411
52
FC7
SOFTWARE
BMA E:411
BINDING SITE FOR RESIDUE MAN E 412
53
FC8
SOFTWARE
SER C:219 , ARG C:222 , ASN E:165 , NAG E:414
BINDING SITE FOR RESIDUE NAG E 413
54
FC9
SOFTWARE
ARG C:222 , NAG E:413 , BMA E:415
BINDING SITE FOR RESIDUE NAG E 414
55
GC1
SOFTWARE
NAG E:414 , MAN E:416 , MAN E:417
BINDING SITE FOR RESIDUE BMA E 415
56
GC2
SOFTWARE
BMA E:415
BINDING SITE FOR RESIDUE MAN E 416
57
GC3
SOFTWARE
BMA E:415
BINDING SITE FOR RESIDUE MAN E 417
58
GC4
SOFTWARE
ASN E:285 , VAL E:297 , NAG E:419
BINDING SITE FOR RESIDUE NAG E 418
59
GC5
SOFTWARE
NAG E:418
BINDING SITE FOR RESIDUE NAG E 419
60
GC6
SOFTWARE
ASN E:126 , THR E:128
BINDING SITE FOR RESIDUE NAG E 420
61
GC7
SOFTWARE
ILE C:217 , ALA E:163 , ARG E:201 , THR E:203 , ASN E:246 , NAG E:422
BINDING SITE FOR RESIDUE NAG E 421
62
GC8
SOFTWARE
ASP C:188 , NAG E:421 , BMA E:423
BINDING SITE FOR RESIDUE NAG E 422
63
GC9
SOFTWARE
NAG E:422
BINDING SITE FOR RESIDUE BMA E 423
64
HC1
SOFTWARE
ASN F:154
BINDING SITE FOR RESIDUE NAG F 201
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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End label:
Sorry, no Info available
[
close PROSITE info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Select:
Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
[
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select residue range 5 to 10 in all chains
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Asym.Unit (1.9 MB)
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Biol.Unit 1 (974 KB)
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