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4O58
Asym. Unit
Info
Asym.Unit (319 KB)
Biol.Unit 1 (922 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY F045-092 IN COMPLEX WITH A/VICTORIA/3/1975 (H3N2) INFLUENZA HEMAGGLUTININ
Authors
:
P. S. Lee, I. A. Wilson
Date
:
19 Dec 13 (Deposition) - 16 Apr 14 (Release) - 14 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,H,L
Biol. Unit 1: A,B,H,L (3x)
Keywords
:
Immunoglobulin, Virus Attachment And Entry, Immune Recognition, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. S. Lee, N. Ohshima, R. L. Stanfield, W. Yu, Y. Iba, Y. Okuno, Y. Kurosawa, I. A. Wilson
Receptor Mimicry By Antibody F045-092 Facilitates Universal Binding To The H3 Subtype Of Influenza Virus.
Nat Commun V. 5 3614 2014
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Hetero Components
(5, 28)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
SO4
14
Ligand/Ion
SULFATE ION
[
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Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:38 , THR A:318 , NAG A:502
BINDING SITE FOR RESIDUE NAG A 501
02
AC2
SOFTWARE
NAG A:501
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
ASN A:63 , PHE A:94
BINDING SITE FOR RESIDUE NAG A 503
04
AC4
SOFTWARE
ASN A:165 , THR A:167 , NAG A:505
BINDING SITE FOR RESIDUE NAG A 504
05
AC5
SOFTWARE
NAG A:504 , BMA A:506
BINDING SITE FOR RESIDUE NAG A 505
06
AC6
SOFTWARE
NAG A:505 , MAN A:507 , MAN A:508
BINDING SITE FOR RESIDUE BMA A 506
07
AC7
SOFTWARE
BMA A:506
BINDING SITE FOR RESIDUE MAN A 507
08
AC8
SOFTWARE
BMA A:506
BINDING SITE FOR RESIDUE MAN A 508
09
AC9
SOFTWARE
SER A:45 , ASN A:285 , VAL A:297 , ASN A:298 , NAG A:510
BINDING SITE FOR RESIDUE NAG A 509
10
BC1
SOFTWARE
NAG A:509 , GLU B:69
BINDING SITE FOR RESIDUE NAG A 510
11
BC2
SOFTWARE
ARG A:90 , LYS A:92 , ASP A:271
BINDING SITE FOR RESIDUE SO4 A 511
12
BC3
SOFTWARE
LYS A:50 , ILE A:274 , GLY A:275 , THR A:276
BINDING SITE FOR RESIDUE SO4 A 512
13
BC4
SOFTWARE
ARG A:57
BINDING SITE FOR RESIDUE SO4 A 513
14
BC5
SOFTWARE
ASN A:122 , ARG A:150
BINDING SITE FOR RESIDUE SO4 A 514
15
BC6
SOFTWARE
ILE A:34 , ARG A:321
BINDING SITE FOR RESIDUE SO4 A 515
16
BC7
SOFTWARE
LYS A:307 , ARG B:54
BINDING SITE FOR RESIDUE PEG A 516
17
BC8
SOFTWARE
ALA B:147 , GLY B:150 , ASN B:154
BINDING SITE FOR RESIDUE NAG B 201
18
BC9
SOFTWARE
ARG B:127 , HIS B:159
BINDING SITE FOR RESIDUE SO4 B 202
19
CC1
SOFTWARE
TRP B:14 , GLU B:15 , GLY B:16 , ARG B:25
BINDING SITE FOR RESIDUE SO4 B 203
20
CC2
SOFTWARE
ARG B:25 , SER B:29 , GLY B:31
BINDING SITE FOR RESIDUE SO4 B 204
21
CC3
SOFTWARE
TYR H:100M , GLY H:100N , THR L:32 , ASN L:34 , TYR L:49 , SER L:50 , PEG L:304
BINDING SITE FOR RESIDUE SO4 L 301
22
CC4
SOFTWARE
SER L:26 , ARG L:27
BINDING SITE FOR RESIDUE SO4 L 302
23
CC5
SOFTWARE
GLN H:43 , ASP L:85 , GLY L:100 , GLY L:101
BINDING SITE FOR RESIDUE PEG L 303
24
CC6
SOFTWARE
TYR H:100L , TYR H:100M , THR L:32 , ASN L:34 , TYR L:36 , TRP L:91 , SO4 L:301
BINDING SITE FOR RESIDUE PEG L 304
25
CC7
SOFTWARE
PHE H:54 , THR H:56 , CYS H:100F
BINDING SITE FOR RESIDUE SO4 H 301
26
CC8
SOFTWARE
GLU H:99 , CYS H:100C , ASP H:100J , TYR H:100K , TYR H:100M
BINDING SITE FOR RESIDUE SO4 H 302
27
CC9
SOFTWARE
ALA H:100H
BINDING SITE FOR RESIDUE SO4 H 303
28
DC1
SOFTWARE
SER H:7 , GLY H:8
BINDING SITE FOR RESIDUE SO4 H 304
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (319 KB)
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Biol.Unit 1 (922 KB)
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