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4O4H
Asym. Unit
Info
Asym.Unit (776 KB)
Biol.Unit 1 (762 KB)
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(1)
Title
:
TUBULIN-LAULIMALIDE COMPLEX
Authors
:
A. E. Prota, K. Bargsten, P. T. Northcote, M. Marsh, K. H. Altmann, J. H. M J. F. Diaz, M. O. Steinmetz
Date
:
18 Dec 13 (Deposition) - 05 Mar 14 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Alpha-Tubulin, Beta-Tubulin, Ligase, Gtpase, Microtubule, Stathmin, Laulimalide, Cell Cycle, Tubulin Fold, Cytoskeleton, Cell Cycle- Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Prota, K. Bargsten, P. T. Northcote, M. Marsh, K. H. Altmann, J. H. Miller, J. F. Diaz, M. O. Steinmetz
Structural Basis Of Microtubule Stabilization By Laulimalid And Peloruside A.
Angew. Chem. Int. Ed. Engl. V. 53 1621 2014
[
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Hetero Components
(7, 16)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
5b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
6a: LAULIMALIDE (LLMa)
7a: MAGNESIUM ION (MGa)
7b: MAGNESIUM ION (MGb)
7c: MAGNESIUM ION (MGc)
7d: MAGNESIUM ION (MGd)
7e: MAGNESIUM ION (MGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
CA
3
Ligand/Ion
CALCIUM ION
3
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
GOL
2
Ligand/Ion
GLYCEROL
5
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
6
LLM
1
Ligand/Ion
LAULIMALIDE
7
MG
5
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , THR A:179 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:601 , HOH A:602 , HOH A:604 , HOH A:606 , HOH A:609 , LYS B:254
BINDING SITE FOR RESIDUE GTP A 501
02
AC2
SOFTWARE
GTP A:501 , HOH A:601 , HOH A:602 , HOH A:603 , HOH A:704
BINDING SITE FOR RESIDUE MG A 502
03
AC3
SOFTWARE
ASP A:39 , THR A:41 , GLY A:44 , GLY A:45 , GLU A:55
BINDING SITE FOR RESIDUE CA A 503
04
AC4
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502 , HOH B:602 , HOH B:603 , HOH B:605 , HOH B:606 , HOH B:608 , HOH B:610 , HOH B:611
BINDING SITE FOR RESIDUE GDP B 501
05
AC5
SOFTWARE
GLN B:11 , GDP B:501 , HOH B:604 , HOH B:605 , HOH B:609 , HOH C:749
BINDING SITE FOR RESIDUE MG B 502
06
AC6
SOFTWARE
GLN B:293 , PHE B:296 , ASP B:297 , SER B:298 , PRO B:307 , ARG B:308 , ASN B:334 , VAL B:335 , ASN B:339 , HOH B:657 , HOH B:663
BINDING SITE FOR RESIDUE LLM B 503
07
AC7
SOFTWARE
ALA B:233 , SER B:236 , GLY B:237 , THR B:240 , PHE B:272 , ARG B:320 , PRO B:360 , SER B:374 , THR B:376
BINDING SITE FOR RESIDUE GOL B 504
08
AC8
SOFTWARE
GLU B:113
BINDING SITE FOR RESIDUE CA B 506
09
AC9
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , THR C:179 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:502 , HOH C:603 , HOH C:617 , HOH C:629 , HOH C:826 , HOH C:827 , HOH C:828 , LYS D:254
BINDING SITE FOR RESIDUE GTP C 501
10
BC1
SOFTWARE
GTP C:501 , HOH C:826 , HOH C:827 , HOH C:828 , HOH C:829
BINDING SITE FOR RESIDUE MG C 502
11
BC2
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:502 , HOH D:606 , HOH D:607 , HOH D:613 , HOH D:621 , HOH D:622 , HOH D:650
BINDING SITE FOR RESIDUE GDP D 501
12
BC3
SOFTWARE
GLN D:11 , ASP D:179 , GDP D:501 , HOH D:607 , HOH D:613 , HOH D:657
BINDING SITE FOR RESIDUE MG D 502
13
BC4
SOFTWARE
PHE D:296 , ASN D:339 , TYR D:342
BINDING SITE FOR RESIDUE GOL D 503
14
BC5
SOFTWARE
LYS F:74 , LYS F:150 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , ARG F:202 , ARG F:222 , HIS F:239 , LEU F:240 , THR F:241 , ASN F:242 , ASP F:318 , ILE F:330 , GLU F:331 , ASN F:333 , MG F:402
BINDING SITE FOR RESIDUE ACP F 401
15
BC6
SOFTWARE
LYS F:74 , GLU F:331 , ASN F:333 , ACP F:401
BINDING SITE FOR RESIDUE MG F 402
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 9)
Info
All SCOP Domains
1a: SCOP_d4o4he_ (E:)
2a: SCOP_d4o4ha2 (A:246-439)
2b: SCOP_d4o4hb2 (B:246-440)
2c: SCOP_d4o4hc2 (C:246-440)
2d: SCOP_d4o4hd2 (D:246-441)
3a: SCOP_d4o4ha1 (A:1-245)
3b: SCOP_d4o4hb1 (B:1-245)
3c: SCOP_d4o4hc1 (C:1-245)
3d: SCOP_d4o4hd1 (D:1-245)
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Classes
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Families
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Stathmin
(21)
Family
:
Stathmin
(21)
Protein domain
:
Stathmin 4
(21)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(21)
1a
d4o4he_
E:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
Tubulin C-terminal domain-like
(76)
Family
:
Tubulin, C-terminal domain
(69)
Protein domain
:
automated matches
(19)
Cow (Bos taurus) [TaxId: 9913]
(11)
2a
d4o4ha2
A:246-439
2b
d4o4hb2
B:246-440
2c
d4o4hc2
C:246-440
2d
d4o4hd2
D:246-441
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tubulin nucleotide-binding domain-like
(75)
Superfamily
:
Tubulin nucleotide-binding domain-like
(75)
Family
:
Tubulin, GTPase domain
(69)
Protein domain
:
automated matches
(20)
Cow (Bos taurus) [TaxId: 9913]
(11)
3a
d4o4ha1
A:1-245
3b
d4o4hb1
B:1-245
3c
d4o4hc1
C:1-245
3d
d4o4hd1
D:1-245
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Atom Selection
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Hetero
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Protein & NOT Site
Protein & NOT PROSITE
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Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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