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4O2B
Asym. Unit
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Asym.Unit (768 KB)
Biol.Unit 1 (754 KB)
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(1)
Title
:
TUBULIN-COLCHICINE COMPLEX
Authors
:
A. E. Prota, D. Franck, F. Bachmann, K. Bargsten, R. M. Buey, J. Pohlmann S. Reinelt, H. Lane, M. O. Steinmetz
Date
:
17 Dec 13 (Deposition) - 05 Mar 14 (Release) - 16 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Alpha-Tubulin, Beta-Tubulin, Ligase, Gtpase, Microtubule, Stathmin, Colchicine, Cell Cycle, Tubulin Fold, Cytoskeleton, Cell Cycle- Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Prota, F. Danel, F. Bachmann, K. Bargsten, R. M. Buey, J. Pohlmann S. Reinelt, H. Lane, M. O. Steinmetz
The Novel Microtubule-Destabilizing Drug Bal27862 Binds To The Colchicine Site Of Tubulin With Distinct Effects On Microtubule Organization.
J. Mol. Biol. V. 426 1848 2014
[
close entry info
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Hetero Components
(10, 34)
Info
All Hetero Components
01a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
02a: CALCIUM ION (CAa)
02b: CALCIUM ION (CAb)
02c: CALCIUM ION (CAc)
03a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
03b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
04a: GLYCEROL (GOLa)
04b: GLYCEROL (GOLb)
04c: GLYCEROL (GOLc)
04d: GLYCEROL (GOLd)
04e: GLYCEROL (GOLe)
04f: GLYCEROL (GOLf)
04g: GLYCEROL (GOLg)
04h: GLYCEROL (GOLh)
04i: GLYCEROL (GOLi)
04j: GLYCEROL (GOLj)
04k: GLYCEROL (GOLk)
04l: GLYCEROL (GOLl)
04m: GLYCEROL (GOLm)
05a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
05b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
06a: IMIDAZOLE (IMDa)
06b: IMIDAZOLE (IMDb)
06c: IMIDAZOLE (IMDc)
07a: N-[(7S)-1,2,3,10-TETRAMETHOXY-9-OX... (LOCa)
07b: N-[(7S)-1,2,3,10-TETRAMETHOXY-9-OX... (LOCb)
08a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
09a: MAGNESIUM ION (MGa)
09b: MAGNESIUM ION (MGb)
09c: MAGNESIUM ION (MGc)
09d: MAGNESIUM ION (MGd)
09e: MAGNESIUM ION (MGe)
10a: DI(HYDROXYETHYL)ETHER (PEGa)
10b: DI(HYDROXYETHYL)ETHER (PEGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
CA
3
Ligand/Ion
CALCIUM ION
3
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
GOL
13
Ligand/Ion
GLYCEROL
5
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
6
IMD
3
Ligand/Ion
IMIDAZOLE
7
LOC
2
Ligand/Ion
N-[(7S)-1,2,3,10-TETRAMETHOXY-9-OXO-6,7-DIHYDRO-5H-BENZO[D]HEPTALEN-7-YL]ETHANAMIDE
8
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
9
MG
5
Ligand/Ion
MAGNESIUM ION
10
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , SER A:178 , THR A:179 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:601 , HOH A:602 , HOH A:603 , HOH A:604 , HOH A:605 , HOH A:636 , LYS B:254
BINDING SITE FOR RESIDUE GTP A 501
02
AC2
SOFTWARE
GLU A:71 , GTP A:501 , HOH A:602 , HOH A:603 , HOH A:604
BINDING SITE FOR RESIDUE MG A 502
03
AC3
SOFTWARE
VAL A:177 , SER A:178 , PRO A:222 , HOH A:634 , HOH A:671 , GLN B:247
BINDING SITE FOR RESIDUE GOL A 503
04
AC4
SOFTWARE
ASN A:216 , PRO A:274 , VAL A:275 , ALA A:294 , ASN A:300 , HOH A:662
BINDING SITE FOR RESIDUE GOL A 504
05
AC5
SOFTWARE
HIS A:309 , GLY A:310 , THR A:382 , ALA A:385 , VAL A:437 , HOH A:715 , ARG F:66
BINDING SITE FOR RESIDUE GOL A 505
06
AC6
SOFTWARE
ASP A:39 , THR A:41 , GLY A:44 , GLU A:55
BINDING SITE FOR RESIDUE CA A 506
07
AC7
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502 , HOH B:601 , HOH B:602 , HOH B:605 , HOH B:606 , HOH B:607 , HOH B:609 , HOH B:610
BINDING SITE FOR RESIDUE GDP B 501
08
AC8
SOFTWARE
GLN B:11 , GDP B:501 , HOH B:602 , HOH B:607 , HOH B:613 , HOH C:652
BINDING SITE FOR RESIDUE MG B 502
09
AC9
SOFTWARE
SER A:178 , THR A:179 , ALA A:180 , VAL A:181 , HOH A:606 , CYS B:241 , LEU B:248 , ALA B:250 , ASP B:251 , LYS B:254 , LEU B:255 , ASN B:258 , THR B:314 , VAL B:315 , ALA B:316 , ILE B:318 , ASN B:350 , LYS B:352 , HOH B:623
BINDING SITE FOR RESIDUE LOC B 503
10
BC1
SOFTWARE
ARG B:401 , HOH B:671 , TYR C:262
BINDING SITE FOR RESIDUE GOL B 504
11
BC2
SOFTWARE
LYS B:105 , THR C:253 , THR C:257 , PEG C:507
BINDING SITE FOR RESIDUE GOL B 505
12
BC3
SOFTWARE
VAL B:177 , PRO B:222 , TYR B:224
BINDING SITE FOR RESIDUE GOL B 506
13
BC4
SOFTWARE
ALA B:233 , SER B:236 , GLY B:237 , PHE B:272 , ARG B:320 , PRO B:360 , SER B:374 , THR B:376
BINDING SITE FOR RESIDUE GOL B 507
14
BC5
SOFTWARE
GLU B:110 , GLU B:113 , CA C:508
BINDING SITE FOR RESIDUE CA B 508
15
BC6
SOFTWARE
TRP A:407 , ARG B:158 , PRO B:162 , ASP B:163 , ARG B:164 , MET B:166 , ASN B:197 , ASP B:199 , ARG B:253 , HOH B:721
BINDING SITE FOR RESIDUE MES B 509
16
BC7
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , ILE C:171 , VAL C:177 , SER C:178 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:502 , HOH C:602 , HOH C:604 , HOH C:605 , HOH C:613 , HOH C:615 , HOH C:816 , HOH C:818 , LYS D:254
BINDING SITE FOR RESIDUE GTP C 501
17
BC8
SOFTWARE
GTP C:501 , HOH C:602 , HOH C:605 , HOH C:613 , HOH C:818
BINDING SITE FOR RESIDUE MG C 502
18
BC9
SOFTWARE
VAL C:177 , SER C:178 , PRO C:222 , TYR C:224 , GLN D:247 , HOH D:622
BINDING SITE FOR RESIDUE GOL C 503
19
CC1
SOFTWARE
SER C:287 , VAL C:288 , ASP C:322 , ASP C:327 , ARG C:373 , HOH C:715
BINDING SITE FOR RESIDUE GOL C 504
20
CC2
SOFTWARE
LYS C:163 , LYS C:164 , LYS C:166 , GLU C:196 , HIS C:197 , SER C:198 , ASP C:199 , HOH C:808
BINDING SITE FOR RESIDUE GOL C 505
21
CC3
SOFTWARE
ARG C:79 , LEU C:92 , ILE C:93 , THR C:94 , LEU C:117 , HOH C:699
BINDING SITE FOR RESIDUE PEG C 506
22
CC4
SOFTWARE
SER B:97 , GOL B:505 , ARG C:2 , GLN C:133 , ASP C:251 , THR C:253 , HOH C:729
BINDING SITE FOR RESIDUE PEG C 507
23
CC5
SOFTWARE
GLU B:113 , CA B:508 , GLU C:279 , TYR C:282
BINDING SITE FOR RESIDUE CA C 508
24
CC6
SOFTWARE
ASP C:431 , HOH C:610
BINDING SITE FOR RESIDUE IMD C 509
25
CC7
SOFTWARE
GLY C:410 , GOL D:505 , LEU E:116
BINDING SITE FOR RESIDUE IMD C 510
26
CC8
SOFTWARE
CYS C:4 , GLN C:133 , SER C:165 , LEU C:167
BINDING SITE FOR RESIDUE IMD C 511
27
CC9
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , VAL D:177 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:502 , HOH D:604 , HOH D:617 , HOH D:647
BINDING SITE FOR RESIDUE GDP D 501
28
DC1
SOFTWARE
GLN D:11 , ASP D:179 , GDP D:501 , HOH D:609 , HOH D:648
BINDING SITE FOR RESIDUE MG D 502
29
DC2
SOFTWARE
ALA C:180 , VAL C:181 , HOH C:664 , CYS D:241 , LEU D:242 , LEU D:248 , ALA D:250 , LYS D:254 , LEU D:255 , ASN D:258 , VAL D:315 , ALA D:316 , ILE D:318 , ASN D:350 , LYS D:352 , HOH D:610
BINDING SITE FOR RESIDUE LOC D 503
30
DC3
SOFTWARE
VAL D:177 , PRO D:222 , THR D:223 , TYR D:224
BINDING SITE FOR RESIDUE GOL D 504
31
DC4
SOFTWARE
TRP C:407 , IMD C:510 , ARG D:158 , ASP D:163 , ARG D:164 , ASP D:199 , ARG D:253 , HOH D:674
BINDING SITE FOR RESIDUE GOL D 505
32
DC5
SOFTWARE
GLU A:196 , ASP E:44
BINDING SITE FOR RESIDUE GOL E 201
33
DC6
SOFTWARE
ARG F:222 , ASP F:318 , ACP F:402
BINDING SITE FOR RESIDUE MG F 401
34
DC7
SOFTWARE
LYS F:74 , LYS F:150 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , ASP F:200 , HIS F:239 , LEU F:240 , THR F:241 , ASN F:242 , ASP F:318 , ILE F:330 , GLU F:331 , ASN F:333 , MG F:401
BINDING SITE FOR RESIDUE ACP F 402
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 9)
Info
All SCOP Domains
1a: SCOP_d4o2be_ (E:)
2a: SCOP_d4o2ba2 (A:246-439)
2b: SCOP_d4o2bb2 (B:246-438)
2c: SCOP_d4o2bc2 (C:246-440)
2d: SCOP_d4o2bd2 (D:246-441)
3a: SCOP_d4o2ba1 (A:1-245)
3b: SCOP_d4o2bb1 (B:1-245)
3c: SCOP_d4o2bc1 (C:1-245)
3d: SCOP_d4o2bd1 (D:1-245)
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Classes
(
)
(
)
Folds
(
)
(
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Superfamilies
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Stathmin
(21)
Family
:
Stathmin
(21)
Protein domain
:
Stathmin 4
(21)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(21)
1a
d4o2be_
E:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
Tubulin C-terminal domain-like
(76)
Family
:
Tubulin, C-terminal domain
(69)
Protein domain
:
automated matches
(19)
Cow (Bos taurus) [TaxId: 9913]
(11)
2a
d4o2ba2
A:246-439
2b
d4o2bb2
B:246-438
2c
d4o2bc2
C:246-440
2d
d4o2bd2
D:246-441
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tubulin nucleotide-binding domain-like
(75)
Superfamily
:
Tubulin nucleotide-binding domain-like
(75)
Family
:
Tubulin, GTPase domain
(69)
Protein domain
:
automated matches
(20)
Cow (Bos taurus) [TaxId: 9913]
(11)
3a
d4o2ba1
A:1-245
3b
d4o2bb1
B:1-245
3c
d4o2bc1
C:1-245
3d
d4o2bd1
D:1-245
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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