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4O0I
Asym. Unit
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Asym.Unit (227 KB)
Biol.Unit 1 (220 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS WITH 2'-MESE-ARABINO-GUANOSINE DERIVATIZED DNA
Authors
:
S. Jiang, J. Gan, H. Sun, Z. Huang
Date
:
13 Dec 13 (Deposition) - 17 Dec 14 (Release) - 17 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Transferase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Jiang, J. Gan, H. Sun, Z. Huang
Crystal Structure Of Fragment Dna Polymerase I From Bacillu Stearothermophilus With 2'-Mese-Arabino-Guanosine Derivatized Dna
To Be Published
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: 2-AMINO-9-(2-SE-METHYL-5-O-PHOSPHO... (1TWa)
1b: 2-AMINO-9-(2-SE-METHYL-5-O-PHOSPHO... (1TWb)
2a: GLYCEROL (GOLa)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
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No.
Name
Count
Type
Full Name
1
1TW
2
Mod. Nucleotide
2-AMINO-9-(2-SE-METHYL-5-O-PHOSPHONO-2-SELENO-BETA-D-ARABINOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE
2
GOL
1
Ligand/Ion
GLYCEROL
3
NA
2
Ligand/Ion
SODIUM ION
4
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:299 , ALA A:300 , ARG A:343 , ARG A:677 , LYS A:684
BINDING SITE FOR RESIDUE SO4 A 901
2
AC2
SOFTWARE
HIS A:682 , ARG A:702 , LYS A:706 , HOH A:1016
BINDING SITE FOR RESIDUE SO4 A 902
3
AC3
SOFTWARE
THR A:308 , GLU A:309 , HOH A:1030
BINDING SITE FOR RESIDUE SO4 A 903
4
AC4
SOFTWARE
GLU A:364 , LYS A:367 , GLY A:389 , VAL A:390 , SER A:391
BINDING SITE FOR RESIDUE SO4 A 904
5
AC5
SOFTWARE
GLU A:515 , TYR A:519 , PHE A:526 , ASN A:527 , ILE A:528 , ASN A:529 , TYR A:577
BINDING SITE FOR RESIDUE SO4 A 905
6
AC6
SOFTWARE
GLU A:667 , ASP A:668 , ASP A:669 , GLY A:745 , ARG A:748 , HOH A:1052
BINDING SITE FOR RESIDUE SO4 A 906
7
AC7
SOFTWARE
GLU A:321 , PHE A:371 , ASP A:372 , ARG A:375 , ASP A:409 , VAL A:410 , ASP A:425 , LYS A:450 , NA A:909 , HOH A:1062 , HOH A:1079
BINDING SITE FOR RESIDUE GOL A 907
8
AC8
SOFTWARE
THR A:308 , GLU A:310
BINDING SITE FOR RESIDUE NA A 908
9
AC9
SOFTWARE
PHE A:371 , ASP A:372 , ARG A:375 , GOL A:907 , HOH A:1060 , HOH A:1061
BINDING SITE FOR RESIDUE NA A 909
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SAPs(SNPs)/Variants
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Exons
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Asymmetric Unit 1
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Asym.Unit (227 KB)
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