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4NYO
Asym. Unit
Info
Asym.Unit (126 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
THE 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE PERIPLASMIC DIVALENT CATION TOLERANCE PROTEIN CUTA FROM PYROCOCCUS HORIKOSHII OT3
Authors
:
B. Bagautdinov, T. H. Tahirov, Riken Structural Genomics/Proteomi Initiative (Rsgi)
Date
:
11 Dec 13 (Deposition) - 01 Jan 14 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Copper Tolerance, Cuta, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein
(Keyword Search:
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Reference
:
B. Bagautdinov
The Structures Of The Cuta1 Proteins From Thermus Thermophilus And Pyrococcus Horikoshii: Characterization Of Metal-Binding Sites And Metal-Induced Assembly
Acta Crystallogr. , Sect. F V. 70 404 2014
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Hetero Components
(5, 22)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
2a: 3-SULFINOALANINE (CSDa)
2b: 3-SULFINOALANINE (CSDb)
2c: 3-SULFINOALANINE (CSDc)
2d: 3-SULFINOALANINE (CSDd)
2e: 3-SULFINOALANINE (CSDe)
2f: 3-SULFINOALANINE (CSDf)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
3c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
3d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
8
Ligand/Ion
CHLORIDE ION
2
CSD
6
Mod. Amino Acid
3-SULFINOALANINE
3
MES
4
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
NA
2
Ligand/Ion
SODIUM ION
5
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:307 , HOH A:335 , HOH B:308 , HOH B:314 , HOH C:310 , HOH C:329
BINDING SITE FOR RESIDUE NA A 201
02
AC2
SOFTWARE
ARG A:33 , ARG B:33 , ARG C:33
BINDING SITE FOR RESIDUE CL A 202
03
AC3
SOFTWARE
TYR A:39 , TRP A:41 , TYR A:75 , ASP A:76 , VAL A:77 , TYR B:92 , TRP B:95
BINDING SITE FOR RESIDUE MES A 203
04
AC4
SOFTWARE
LYS B:70 , HOH B:336 , ASN C:89 , GLU C:90 , GLU F:59 , ASP F:60
BINDING SITE FOR RESIDUE CL B 201
05
AC5
SOFTWARE
MET B:1 , GLU B:59
BINDING SITE FOR RESIDUE CL B 202
06
AC6
SOFTWARE
TYR B:39 , TRP B:41 , TYR B:75 , ASP B:76 , VAL B:77 , TYR C:92
BINDING SITE FOR RESIDUE MES B 203
07
AC7
SOFTWARE
ASN A:89 , GLU A:90 , LYS C:66 , LYS C:70
BINDING SITE FOR RESIDUE CL C 201
08
AC8
SOFTWARE
LYS B:23 , TYR C:75 , ASP C:76 , VAL C:77 , HOH C:379
BINDING SITE FOR RESIDUE SO4 C 202
09
AC9
SOFTWARE
HOH D:3138 , HOH D:3142 , HOH E:4115 , HOH E:4144 , HOH F:307 , HOH F:375
BINDING SITE FOR RESIDUE NA D 3001
10
BC1
SOFTWARE
LYS D:66 , LYS D:70 , ASN E:89 , GLU E:90
BINDING SITE FOR RESIDUE CL D 3002
11
BC2
SOFTWARE
ASN D:89 , GLU D:90 , LYS F:66 , LYS F:70
BINDING SITE FOR RESIDUE CL D 3003
12
BC3
SOFTWARE
MET D:1 , GLU D:59 , HOH D:3132
BINDING SITE FOR RESIDUE CL D 3004
13
BC4
SOFTWARE
ARG D:33 , ILE D:54 , ARG E:33 , ILE E:54 , ARG F:33 , ILE F:54
BINDING SITE FOR RESIDUE SO4 D 3005
14
BC5
SOFTWARE
TRP D:41 , TYR D:75 , ASP D:76 , VAL D:77 , HOH D:3224 , TYR E:92
BINDING SITE FOR RESIDUE MES D 3006
15
BC6
SOFTWARE
LYS E:66 , LYS E:70 , ASN F:89 , GLU F:90
BINDING SITE FOR RESIDUE CL E 4001
16
BC7
SOFTWARE
TYR D:92 , TRP F:41 , TYR F:75 , ASP F:76 , VAL F:77
BINDING SITE FOR RESIDUE MES F 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4nyoa_ (A:)
1b: SCOP_d4nyob_ (B:)
1c: SCOP_d4nyoc_ (C:)
1d: SCOP_d4nyod_ (D:)
1e: SCOP_d4nyoe_ (E:)
1f: SCOP_d4nyof_ (F:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
GlnB-like
(79)
Family
:
Divalent ion tolerance proteins CutA (CutA1)
(22)
Protein domain
:
Cut A1
(14)
Pyrococcus horikoshii [TaxId: 53953]
(6)
1a
d4nyoa_
A:
1b
d4nyob_
B:
1c
d4nyoc_
C:
1d
d4nyod_
D:
1e
d4nyoe_
E:
1f
d4nyof_
F:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (126 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
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