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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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4NWP
Biol. Unit 1
Info
Asym.Unit (353 KB)
Biol.Unit 1 (1007 KB)
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(1)
Title
:
COMPUTATIONALLY DESIGNED TWO-COMPONENT SELF-ASSEMBLING TETRAHEDRAL CAGE, T33-21, CRYSTALLIZED IN SPACE GROUP R32
Authors
:
D. E. Mcnamara, N. P. King, J. B. Bale, W. Sheffler, D. Baker, T. O. Yeates
Date
:
06 Dec 13 (Deposition) - 28 May 14 (Release) - 28 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (3x)
Keywords
:
Two-Component, Self-Assembling, Tetrahedron, Designed Protein Cage, Computational Design, Computational Biology, Protein Engineering, Multimerization, Nanomaterial, Nanostructure, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. P. King, J. B. Bale, W. Sheffler, D. E. Mcnamara, S. Gonen, T. Gonen, T. O. Yeates, D. Baker
Accurate Design Of Co-Assembling Multi-Component Protein Nanomaterials
Nature 2014
[
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Hetero Components
(2, 87)
Info
All Hetero Components
1a: AMMONIUM ION (NH4a)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NH4
3
Ligand/Ion
AMMONIUM ION
2
SO4
84
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:134 , ASP H:73 , ILE H:74 , ARG H:77
BINDING SITE FOR RESIDUE SO4 A 201
02
AC2
SOFTWARE
SER A:25 , THR A:131 , ARG A:134 , HOH A:304
BINDING SITE FOR RESIDUE SO4 A 202
03
AC3
SOFTWARE
TRP A:86 , LYS A:89 , ARG A:93
BINDING SITE FOR RESIDUE SO4 A 203
04
AC4
SOFTWARE
GLU A:29 , ARG A:124 , LYS A:128 , HOH A:303 , HOH A:309
BINDING SITE FOR RESIDUE SO4 A 204
05
AC5
SOFTWARE
TYR A:47
BINDING SITE FOR RESIDUE SO4 A 205
06
AC6
SOFTWARE
ARG B:124 , LYS B:128 , HOH B:302 , HOH B:306 , HOH B:312 , GLU C:29 , ARG C:124 , LYS C:128 , HOH C:304 , HOH C:305 , ARG D:124 , LYS D:128 , HOH D:302
BINDING SITE FOR RESIDUE SO4 B 201
07
AC7
SOFTWARE
THR B:131 , ARG B:134 , HOH B:307 , SER C:25
BINDING SITE FOR RESIDUE SO4 B 202
08
AC8
SOFTWARE
HIS B:46 , LYS B:53 , HOH B:321
BINDING SITE FOR RESIDUE SO4 B 203
09
AC9
SOFTWARE
TRP C:86 , ARG C:93
BINDING SITE FOR RESIDUE SO4 C 201
10
BC1
SOFTWARE
THR C:131 , ARG C:134 , SER D:25
BINDING SITE FOR RESIDUE SO4 C 202
11
BC2
SOFTWARE
HIS C:46 , LYS C:53
BINDING SITE FOR RESIDUE SO4 C 203
12
BC3
SOFTWARE
SER B:25 , THR D:131 , ARG D:134 , HOH D:303
BINDING SITE FOR RESIDUE SO4 D 201
13
BC4
SOFTWARE
HIS D:46 , LYS D:53
BINDING SITE FOR RESIDUE SO4 D 202
14
BC5
SOFTWARE
TYR B:47 , TYR C:47 , TYR D:47
BINDING SITE FOR RESIDUE SO4 D 203
15
BC6
SOFTWARE
ARG C:134 , ASP E:73 , ILE E:74 , ARG E:77
BINDING SITE FOR RESIDUE SO4 E 201
16
BC7
SOFTWARE
LEU E:69 , ARG E:72 , ARG E:111 , HOH E:318
BINDING SITE FOR RESIDUE SO4 E 202
17
BC8
SOFTWARE
ARG E:107 , HOH E:309 , HOH E:311
BINDING SITE FOR RESIDUE SO4 E 203
18
BC9
SOFTWARE
PRO E:2 , HIS E:3 , LYS E:41 , TYR E:114
BINDING SITE FOR RESIDUE SO4 E 204
19
CC1
SOFTWARE
ARG F:107 , HOH F:303 , HOH F:306 , ARG G:107 , ARG H:107 , HOH H:304 , HOH H:306
BINDING SITE FOR RESIDUE SO4 F 201
20
CC2
SOFTWARE
LEU F:69 , ARG F:72 , ARG F:111 , HOH F:310
BINDING SITE FOR RESIDUE SO4 F 202
21
CC3
SOFTWARE
ARG B:134 , ASP F:73 , ILE F:74 , ARG F:77
BINDING SITE FOR RESIDUE SO4 F 203
22
CC4
SOFTWARE
PRO F:2 , HIS F:3 , ASP F:39 , LYS F:41 , TYR F:114
BINDING SITE FOR RESIDUE SO4 F 204
23
CC5
SOFTWARE
ARG D:134 , ASP G:73 , ILE G:74 , ARG G:77
BINDING SITE FOR RESIDUE SO4 G 201
24
CC6
SOFTWARE
PRO G:2 , HIS G:3 , ASP G:39 , LYS G:41 , TYR G:114 , LYS G:116 , SER H:103
BINDING SITE FOR RESIDUE SO4 G 202
25
CC7
SOFTWARE
LEU G:69 , ARG G:72 , ARG G:111
BINDING SITE FOR RESIDUE SO4 G 203
26
CC8
SOFTWARE
GLY G:19 , HOH G:327 , ARG H:51 , HOH H:308
BINDING SITE FOR RESIDUE SO4 H 201
27
CC9
SOFTWARE
LEU H:69 , ARG H:72 , ARG H:111 , HOH H:310
BINDING SITE FOR RESIDUE SO4 H 202
28
DC1
SOFTWARE
PRO H:2 , HIS H:3 , ASP H:39 , LYS H:41 , TYR H:114 , LYS H:116
BINDING SITE FOR RESIDUE SO4 H 203
29
DC2
SOFTWARE
MET G:109 , GLU G:110 , GLU H:105 , VAL H:106 , HOH H:304
BINDING SITE FOR RESIDUE NH4 H 204
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
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Chain C
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Chain E
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Chain G
Chain H
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (353 KB)
Header - Asym.Unit
Biol.Unit 1 (1007 KB)
Header - Biol.Unit 1
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