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4NRK
Asym. Unit
Info
Asym.Unit (266 KB)
Biol.Unit 1 (255 KB)
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(1)
Title
:
STRUCTURE OF HEMAGGLUTININ WITH F95Y MUTATION OF INFLUENZA VIRUS B/LEE/40 COMPLEX WITH LSTC
Authors
:
F. Ni, I. N. Mbawuike, E. Kondrashkina, Q. Wang
Date
:
26 Nov 13 (Deposition) - 12 Mar 14 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.63
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Ha, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Ni, I. Nnadi Mbawuike, E. Kondrashkina, Q. Wang
The Roles Of Hemagglutinin Phe-95 In Receptor Binding And Pathogenicity Of Influenza B Virus.
Virology V. -451 71 2014
[
close entry info
]
Hetero Components
(4, 42)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: O-SIALIC ACID (SIAa)
4b: O-SIALIC ACID (SIAb)
4c: O-SIALIC ACID (SIAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
3
NAG
35
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SIA
3
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:12 , PRO A:13 , VAL A:15 , ASN A:25 , TYR A:336 , HOH A:563
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 25 RESIDUES 401 TO 402
02
AC2
SOFTWARE
ASN A:145 , THR A:147 , GLY A:149 , ASN A:150 , HOH A:574
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 145 RESIDUES 403 TO 404
03
AC3
SOFTWARE
ASN A:232
BINDING SITE FOR MONO-SACCHARIDE NAG A 405 BOUND TO ASN A 232
04
AC4
SOFTWARE
GLU A:291 , ASN A:303
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 303 RESIDUES 406 TO 407
05
AC5
SOFTWARE
ILE A:30 , ASN A:332 , TRP B:21 , GLN B:42 , ILE B:45
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 332 RESIDUES 408 TO 409
06
AC6
SOFTWARE
TYR A:95 , THR A:139 , SER A:140 , GLY A:141 , ASP A:195 , GLN A:199 , ARG A:202 , LEU A:203 , LYS A:240 , GLN A:241 , SER A:242 , HOH A:518
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 410 TO 412
07
AC7
SOFTWARE
ASN B:145
BINDING SITE FOR MONO-SACCHARIDE NAG B 201 BOUND TO ASN B 145
08
AC8
SOFTWARE
SER C:12 , PRO C:13 , ASN C:25 , TYR C:336
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 25 RESIDUES 401 TO 402
09
AC9
SOFTWARE
ASN C:123 , ASN C:126 , GLU C:128 , THR C:129 , ASN C:145 , THR C:147 , GLY C:149 , ASN C:150 , HOH C:569
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 145 RESIDUES 403 TO 405
10
BC1
SOFTWARE
ASN C:232 , HOH C:550
BINDING SITE FOR MONO-SACCHARIDE NAG C 406 BOUND TO ASN C 232
11
BC2
SOFTWARE
GLU C:291 , ASN C:303
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 303 RESIDUES 407 TO 408
12
BC3
SOFTWARE
ILE C:30 , ASN C:332 , HOH C:522 , ILE D:45
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 332 RESIDUES 409 TO 410
13
BC4
SOFTWARE
TYR C:95 , THR C:139 , SER C:140 , GLY C:141 , TRP C:158 , ASP C:195 , ARG C:202 , LEU C:203 , LYS C:240 , GLN C:241 , SER C:242 , GLY C:243
BINDING SITE FOR CHAIN C OF POLYSACCHARIDE RESIDUES 411 TO 413
14
BC5
SOFTWARE
ASN D:145 , THR D:147 , HOH D:329
BINDING SITE FOR MONO-SACCHARIDE NAG D 201 BOUND TO ASN D 145
15
BC6
SOFTWARE
SER E:12 , PRO E:13 , VAL E:15 , ASN E:25 , TYR E:336
BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 25 RESIDUES 401 TO 402
16
BC7
SOFTWARE
ASN E:59 , ARG E:69 , GLU E:237
BINDING SITE FOR MONO-SACCHARIDE NAG E 403 BOUND TO ASN E 59
17
BC8
SOFTWARE
GLU A:182 , ASN E:145 , THR E:147 , GLY E:149 , ASN E:150
BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 145 RESIDUES 404 TO 405
18
BC9
SOFTWARE
PHE E:230 , ASN E:232 , HOH E:537 , HOH E:558 , HOH E:584
BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 232 RESIDUES 406 TO 407
19
CC1
SOFTWARE
GLU E:291 , ASN E:303 , HOH E:583
BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 303 RESIDUES 408 TO 409
20
CC2
SOFTWARE
ILE E:30 , ASN E:332 , HOH E:552 , TRP F:21
BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 332 RESIDUES 410 TO 411
21
CC3
SOFTWARE
TYR E:95 , THR E:139 , SER E:140 , GLY E:141 , TRP E:158 , ASP E:195 , GLN E:199 , ARG E:202 , LEU E:203 , LEU E:239 , LYS E:240 , GLN E:241 , SER E:242 , HOH E:564 , HOH E:594
BINDING SITE FOR CHAIN E OF POLYSACCHARIDE RESIDUES 412 TO 414
22
CC4
SOFTWARE
ASN F:145 , THR F:147
BINDING SITE FOR MONO-SACCHARIDE NAG F 201 BOUND TO ASN F 145
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d4nrka_ (A:)
1b: SCOP_d4nrkc_ (C:)
1c: SCOP_d4nrke_ (E:)
2a: SCOP_d4nrkb_ (B:)
2b: SCOP_d4nrkd_ (D:)
2c: SCOP_d4nrkf_ (F:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza b virus
(4)
1a
d4nrka_
A:
1b
d4nrkc_
C:
1c
d4nrke_
E:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza b virus [TaxId: 107412]
(3)
2a
d4nrkb_
B:
2b
d4nrkd_
D:
2c
d4nrkf_
F:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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