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4NO6
Asym. Unit
Info
Asym.Unit (2.0 MB)
Biol.Unit 1, α-C (2.0 MB)
Biol.Unit 1 (2.0 MB)
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(1)
Title
:
YCP IN COMPLEX WITH Z-LEU-LEU-LEU-VINYLSULFONE
Authors
:
M. L. Stein, H. Cui, P. Beck, C. Dubiella, C. Voss, A. Krueger, B. Schmidt
Date
:
19 Nov 13 (Deposition) - 12 Feb 14 (Release) - 19 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b (1x)
Keywords
:
Proteasome, Peptide Electrophile, Binding Analysis, Irreversible Inhibitor, Vinylsulfone, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. L. Stein, H. Cui, P. Beck, C. Dubiella, C. Voss, A. Kruger, B. Schmidt M. Groll
Systematic Comparison Of Peptidic Proteasome Inhibitors Highlights The Alpha-Ketoamide Electrophile As An Auspiciou Reversible Lead Motif.
Angew. Chem. Int. Ed. Engl. V. 53 1679 2014
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N... (2M1a)
1b: N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N... (2M1b)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2M1
2
Ligand/Ion
N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N-[(3S)-5-METHYL-1-(METHYLSULFONYL)HEXAN-3-YL]-L-LEUCINAMIDE
2
MG
8
Ligand/Ion
MAGNESIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR G:8 , TYR G:119 , ARG G:122 , ALA G:123 , MET G:125
BINDING SITE FOR RESIDUE MG G 301
02
AC2
SOFTWARE
GLN H:91 , ASP N:51 , ASN N:92
BINDING SITE FOR RESIDUE MG H 301
03
AC3
SOFTWARE
ALA I:174 , ASP I:177 , SER I:180
BINDING SITE FOR RESIDUE MG I 301
04
AC4
SOFTWARE
THR K:1 , ALA K:20 , THR K:21 , ALA K:27 , MET K:45 , GLY K:47 , ALA K:49 , SER K:131 , ASP L:126
BINDING SITE FOR RESIDUE 2M1 K 301
05
AC5
SOFTWARE
ALA K:165 , HIS K:166 , ASP K:168 , ALA K:169 , SER K:171 , ASP W:204
BINDING SITE FOR RESIDUE MG K 302
06
AC6
SOFTWARE
ARG N:19 , ILE N:163 , ASP N:166 , SER N:169
BINDING SITE FOR RESIDUE MG N 201
07
AC7
SOFTWARE
ASP L:222 , ILE V:163 , ASP V:166 , SER V:169
BINDING SITE FOR RESIDUE MG V 301
08
AC8
SOFTWARE
THR Y:1 , ALA Y:20 , THR Y:21 , ALA Y:27 , GLY Y:47 , ALA Y:49 , SER Y:131 , HOH Y:405 , ASP Z:126
BINDING SITE FOR RESIDUE 2M1 Y 301
09
AC9
SOFTWARE
ASP I:204 , ALA Y:165 , ASP Y:168 , ALA Y:169 , SER Y:171
BINDING SITE FOR RESIDUE MG Y 302
10
BC1
SOFTWARE
ARG Z:28 , THR Z:192 , HIS Z:195 , VAL Z:198 , ASP Z:222
BINDING SITE FOR RESIDUE MG Z 301
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d4no6c_ (C:)
1b: SCOP_d4no6f_ (F:)
1c: SCOP_d4no6q_ (Q:)
1d: SCOP_d4no6t_ (T:)
2a: SCOP_d4no6b_ (B:)
2b: SCOP_d4no6g_ (G:)
2c: SCOP_d4no6h_ (H:)
2d: SCOP_d4no6m_ (M:)
2e: SCOP_d4no6p_ (P:)
2f: SCOP_d4no6u_ (U:)
2g: SCOP_d4no6v_ (V:)
3a: SCOP_d4no6a_ (A:)
3b: SCOP_d4no6e_ (E:)
3c: SCOP_d4no6i_ (I:)
3d: SCOP_d4no6j_ (J:)
3e: SCOP_d4no6k_ (K:)
3f: SCOP_d4no6l_ (L:)
3g: SCOP_d4no6n_ (N:)
3h: SCOP_d4no6o_ (O:)
3i: SCOP_d4no6s_ (S:)
3j: SCOP_d4no6w_ (W:)
3k: SCOP_d4no6x_ (X:)
3l: SCOP_d4no6y_ (Y:)
3m: SCOP_d4no6z_ (Z:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
automated matches
(34)
Protein domain
:
automated matches
(34)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
(8)
1a
d4no6c_
C:
1b
d4no6f_
F:
1c
d4no6q_
Q:
1d
d4no6t_
T:
Family
:
Proteasome subunits
(222)
Protein domain
:
automated matches
(78)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
(19)
2a
d4no6b_
B:
2b
d4no6g_
G:
2c
d4no6h_
H:
2d
d4no6m_
M:
2e
d4no6p_
P:
2f
d4no6u_
U:
2g
d4no6v_
V:
Protein domain
:
Proteasome alpha subunit (non-catalytic)
(66)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(54)
3a
d4no6a_
A:
3b
d4no6e_
E:
3c
d4no6i_
I:
3d
d4no6j_
J:
3e
d4no6k_
K:
3f
d4no6l_
L:
3g
d4no6n_
N:
3h
d4no6o_
O:
3i
d4no6s_
S:
3j
d4no6w_
W:
3k
d4no6x_
X:
3l
d4no6y_
Y:
3m
d4no6z_
Z:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
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Chain T
Chain U
Chain V
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Chain b
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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