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4NM9
Asym. Unit
Info
Asym.Unit (644 KB)
Biol.Unit 1 (637 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE RESTING STATE OF PROLINE UTILIZATION A (PUTA) FROM GEOBACTER SULFURREDUCENS PCA
Authors
:
H. Singh, J. J. Tanner
Date
:
14 Nov 13 (Deposition) - 19 Feb 14 (Release) - 19 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Flavoenzyme, Rossmann Fold, Aldehyde Dehydrogenase, Flavin Adenine Dinucleotide, Nicotinamide Adenine Dinucleotide, Proline Catabolism, Substrate Channeling, Bifunctional Enzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Singh, B. W. Arentson, D. F. Becker, J. J. Tanner
Structures Of The Puta Peripheral Membrane Flavoenzyme Reveal A Dynamic Substrate-Channeling Tunnel And The Quinone-Binding Site.
Proc. Natl. Acad. Sci. Usa V. 111 3389 2014
[
close entry info
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
22
Ligand/Ion
1,2-ETHANEDIOL
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:244 , MET A:245 , GLN A:276 , TYR A:278 , ARG A:303 , VAL A:305 , LYS A:306 , GLY A:307 , ALA A:308 , TYR A:309 , TRP A:310 , TRP A:327 , THR A:328 , ILE A:329 , LYS A:330 , SER A:333 , ALA A:356 , SER A:357 , HIS A:358 , ASN A:359 , LEU A:385 , TYR A:406 , GLU A:425 , SER A:431 , PHE A:432 , HOH A:2173 , HOH A:2284 , HOH A:2579 , HOH A:2583
BINDING SITE FOR RESIDUE FAD A 2001
02
AC2
SOFTWARE
TYR A:248 , TRP A:322 , ASP A:485 , HOH A:2114 , HOH A:2188 , HOH A:2305
BINDING SITE FOR RESIDUE EDO A 2002
03
AC3
SOFTWARE
GLN A:319 , ARG A:945 , HOH A:2678 , GLU B:636
BINDING SITE FOR RESIDUE EDO A 2003
04
AC4
SOFTWARE
GLU A:609 , PHE A:613 , ALA A:950 , LEU A:951 , VAL A:952 , GLN A:955 , PRO A:956 , PHE A:957 , ALA A:969 , HOH A:2190
BINDING SITE FOR RESIDUE EDO A 2004
05
AC5
SOFTWARE
ASN A:911 , THR A:913 , PHE A:915 , ALA A:916 , ARG A:937 , VAL A:938 , ARG A:961 , HOH A:2141
BINDING SITE FOR RESIDUE EDO A 2005
06
AC6
SOFTWARE
TRP A:327 , GLU A:332 , ALA A:336 , ARG A:339 , ARG A:458 , HOH A:2658
BINDING SITE FOR RESIDUE EDO A 2006
07
AC7
SOFTWARE
GLU A:636 , GLN B:319 , ARG B:945
BINDING SITE FOR RESIDUE EDO A 2007
08
AC8
SOFTWARE
LYS A:755 , ILE A:756 , VAL A:965 , HOH A:2217 , LYS B:755
BINDING SITE FOR RESIDUE EDO A 2008
09
AC9
SOFTWARE
PRO A:269 , GLN A:299 , ILE A:300 , HIS A:352 , ARG A:379
BINDING SITE FOR RESIDUE EDO A 2009
10
BC1
SOFTWARE
PHE A:478 , ARG A:619 , GLU A:620 , GLU A:953 , HOH A:2521 , HOH A:2639
BINDING SITE FOR RESIDUE EDO A 2010
11
BC2
SOFTWARE
MET A:483 , ASP A:601 , ALA A:605
BINDING SITE FOR RESIDUE EDO A 2011
12
BC3
SOFTWARE
HIS A:498 , LYS A:583 , ARG A:584 , LEU A:585 , PHE A:586 , GLU A:587 , HOH B:2568
BINDING SITE FOR RESIDUE EDO A 2012
13
BC4
SOFTWARE
GLY A:715 , ASP A:716
BINDING SITE FOR RESIDUE EDO A 2013
14
BC5
SOFTWARE
ASP B:244 , MET B:245 , VAL B:274 , GLN B:276 , TYR B:278 , ARG B:303 , VAL B:305 , LYS B:306 , GLY B:307 , ALA B:308 , TYR B:309 , TRP B:310 , TRP B:327 , THR B:328 , ILE B:329 , LYS B:330 , SER B:333 , ALA B:356 , SER B:357 , HIS B:358 , ASN B:359 , LEU B:385 , TYR B:406 , GLU B:425 , SER B:431 , PHE B:432 , HOH B:2272 , HOH B:2392 , HOH B:2477
BINDING SITE FOR RESIDUE FAD B 2001
15
BC6
SOFTWARE
ASP B:770 , ASP B:803 , ALA B:804 , LYS B:901 , HOH B:2177
BINDING SITE FOR RESIDUE EDO B 2002
16
BC7
SOFTWARE
ASP A:770 , ASP A:803 , ALA A:804 , LYS A:901 , HOH A:2480
BINDING SITE FOR RESIDUE EDO B 2003
17
BC8
SOFTWARE
GLU B:609 , PHE B:613 , ALA B:950 , LEU B:951 , VAL B:952 , GLN B:955 , PHE B:957 , ALA B:969 , GLY B:970 , HOH B:2140
BINDING SITE FOR RESIDUE EDO B 2004
18
BC9
SOFTWARE
TYR B:248 , TRP B:322 , ASP B:485 , HOH B:2236 , HOH B:2396 , HOH B:2409
BINDING SITE FOR RESIDUE EDO B 2005
19
CC1
SOFTWARE
ASN B:911 , THR B:913 , PHE B:915 , ALA B:916 , ARG B:937 , VAL B:938 , ARG B:961 , HOH B:2415 , HOH B:2511
BINDING SITE FOR RESIDUE EDO B 2006
20
CC2
SOFTWARE
TRP B:327 , GLU B:332 , ALA B:336 , ARG B:339 , ARG B:458 , HOH B:2565
BINDING SITE FOR RESIDUE EDO B 2007
21
CC3
SOFTWARE
LYS A:755 , LYS B:755 , ILE B:756 , VAL B:965 , HIS B:977 , HOH B:2134
BINDING SITE FOR RESIDUE EDO B 2008
22
CC4
SOFTWARE
PHE B:513 , LEU B:699 , PRO B:700 , GLU B:701 , GLY B:702 , VAL B:703 , PHE B:704 , HOH B:2150 , HOH B:2516
BINDING SITE FOR RESIDUE EDO B 2009
23
CC5
SOFTWARE
PRO B:269 , GLN B:299 , ILE B:300 , HIS B:352 , ARG B:379
BINDING SITE FOR RESIDUE EDO B 2010
24
CC6
SOFTWARE
TYR B:616 , ARG B:619 , GLU B:620 , GLU B:953 , HOH B:2540 , HOH B:2584
BINDING SITE FOR RESIDUE EDO B 2011
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Variant
Protein & NOT Site
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Chain A
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Asymmetric Unit 1
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Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (644 KB)
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