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4NHE
Asym. Unit
Info
Asym.Unit (347 KB)
Biol.Unit 1 (225 KB)
Biol.Unit 2 (229 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF OXIDOREDUCTASE (GFO/IDH/MOCA FAMILY) FROM STREPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH NADP
Authors
:
K. Tan, C. Hatzos-Skintges, R. Jedrzejczak, A. Joachimiak, Midwest C Structural Genomics (Mcsg)
Date
:
04 Nov 13 (Deposition) - 27 Nov 13 (Release) - 27 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Keywords
:
Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tan, C. Hatzos-Skintges, R. Jedrzejczak, A. Joachimiak
The Crystal Structure Of Oxidoreductase (Gfo/Idh/Moca Family) From Streptococcus Pneumoniae Tigr4 In Complex With Nadp.
To Be Published
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
2f: FORMIC ACID (FMTf)
2g: FORMIC ACID (FMTg)
2h: FORMIC ACID (FMTh)
2i: FORMIC ACID (FMTi)
2j: FORMIC ACID (FMTj)
2k: FORMIC ACID (FMTk)
2l: FORMIC ACID (FMTl)
2m: FORMIC ACID (FMTm)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
4b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
4c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
FMT
13
Ligand/Ion
FORMIC ACID
3
GOL
3
Ligand/Ion
GLYCEROL
4
NAP
3
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:9 , GLY A:10 , ILE A:12 , SER A:33 , ARG A:34 , ALA A:69 , SER A:70 , PRO A:71 , ASN A:72 , LEU A:74 , HIS A:75 , GLU A:92 , LYS A:93 , ARG A:121 , ASN A:164 , PHE A:170 , ASP A:177 , TYR A:181 , FMT A:402 , HOH A:525 , HOH A:527 , HOH A:585 , HOH A:588 , HOH A:589 , HOH A:613 , HOH A:615 , HOH A:625 , HOH A:637 , HOH A:658
BINDING SITE FOR RESIDUE NAP A 401
02
AC2
SOFTWARE
LYS A:93 , ASP A:177 , LEU A:178 , TYR A:181 , NAP A:401 , HOH A:614
BINDING SITE FOR RESIDUE FMT A 402
03
AC3
SOFTWARE
MET A:154 , ASN A:229 , LEU B:141 , HOH B:504
BINDING SITE FOR RESIDUE FMT A 403
04
AC4
SOFTWARE
TYR A:123 , ARG A:188 , TRP A:299
BINDING SITE FOR RESIDUE FMT A 404
05
AC5
SOFTWARE
THR B:9 , GLY B:10 , ILE B:12 , SER B:33 , ARG B:34 , THR B:38 , ALA B:69 , SER B:70 , PRO B:71 , ASN B:72 , LEU B:74 , HIS B:75 , GLU B:92 , LYS B:93 , ARG B:121 , ASN B:164 , PHE B:170 , ASP B:177 , TYR B:181 , FMT B:402 , HOH B:508 , HOH B:517 , HOH B:525 , HOH B:555 , HOH B:558 , HOH B:562 , HOH B:600 , HOH B:611 , HOH B:618 , HOH B:713
BINDING SITE FOR RESIDUE NAP B 401
06
AC6
SOFTWARE
LYS B:93 , TYR B:181 , NAP B:401 , HOH B:594 , HOH B:653
BINDING SITE FOR RESIDUE FMT B 402
07
AC7
SOFTWARE
ALA A:143 , GLN A:221 , ASN B:210 , GLY B:211 , ASP B:212 , LYS B:225
BINDING SITE FOR RESIDUE FMT B 403
08
AC8
SOFTWARE
HOH B:528
BINDING SITE FOR RESIDUE FMT B 404
09
AC9
SOFTWARE
ASN B:294 , GLN B:297 , HOH B:623 , VAL C:187 , GLY C:191 , ASP C:302 , ACT C:410 , HOH C:657
BINDING SITE FOR RESIDUE FMT B 405
10
BC1
SOFTWARE
GLU B:110 , ASN B:113 , HOH B:674 , LYS C:192 , TYR C:301 , HOH C:601
BINDING SITE FOR RESIDUE GOL B 406
11
BC2
SOFTWARE
THR C:9 , GLY C:10 , ILE C:12 , SER C:33 , ARG C:34 , THR C:38 , ALA C:69 , SER C:70 , PRO C:71 , ASN C:72 , LEU C:74 , HIS C:75 , GLU C:92 , LYS C:93 , ARG C:121 , ASN C:164 , PHE C:170 , ASP C:177 , TYR C:181 , FMT C:402 , HOH C:512 , HOH C:529 , HOH C:539 , HOH C:560 , HOH C:588 , HOH C:635 , HOH C:637 , HOH C:668 , HOH C:705
BINDING SITE FOR RESIDUE NAP C 401
12
BC3
SOFTWARE
LYS C:93 , TYR C:181 , NAP C:401 , HOH C:572
BINDING SITE FOR RESIDUE FMT C 402
13
BC4
SOFTWARE
VAL C:96 , SER C:97 , GLN C:98 , PRO C:99 , HIS C:307 , LEU C:310 , HOH C:631
BINDING SITE FOR RESIDUE FMT C 403
14
BC5
SOFTWARE
THR C:241 , ASP C:242 , HIS C:261 , HOH C:665 , HOH C:726
BINDING SITE FOR RESIDUE FMT C 404
15
BC6
SOFTWARE
TRP C:299
BINDING SITE FOR RESIDUE FMT C 405
16
BC7
SOFTWARE
PRO C:71 , ASN C:72 , ASN C:164 , VAL C:165 , PHE C:170
BINDING SITE FOR RESIDUE FMT C 406
17
BC8
SOFTWARE
SER C:151 , LYS C:228
BINDING SITE FOR RESIDUE FMT C 407
18
BC9
SOFTWARE
ILE B:106 , GLN B:297 , TYR B:301 , ASN C:294 , GLN C:297 , THR C:298 , HOH C:583 , HOH C:609
BINDING SITE FOR RESIDUE GOL C 408
19
CC1
SOFTWARE
GLU C:110 , ASN C:113 , PHE C:115 , HOH C:614
BINDING SITE FOR RESIDUE GOL C 409
20
CC2
SOFTWARE
GLN B:297 , FMT B:405 , HOH B:623 , LYS C:132 , HOH C:657
BINDING SITE FOR RESIDUE ACT C 410
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (347 KB)
Header - Asym.Unit
Biol.Unit 1 (225 KB)
Header - Biol.Unit 1
Biol.Unit 2 (229 KB)
Header - Biol.Unit 2
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