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4NGQ
Biol. Unit 1
Info
Asym.Unit (136 KB)
Biol.Unit 1 (251 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUTAMATE CARBOXYPEPTIDASE II IN A COMPLEX WITH UREA-BASED INHIBITOR
Authors
:
J. Tykvart, P. Pachl
Date
:
02 Nov 13 (Deposition) - 18 Jun 14 (Release) - 18 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.08
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase, Metallopeptidase, Glycoprotein, Urea-Based Inhibitor, Trasmembrane, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Tykvart, J. Schimer, J. Barinkova, P. Pachl, L. Postova-Slavetinska, P. Majer, J. Konvalinka, P. Sacha
Rational Design Of Urea-Based Glutamate Carboxypeptidase Ii (Gcpii) Inhibitors As Versatile Tools For Specific Drug Targeting And Delivery
Bioorg. Med. Chem. 2014
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Hetero Components
(4, 32)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
4a: N-({(1S)-6-(4-BROMOBENZYL)-1-CARBO... (J37a)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
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Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
J37
2
Ligand/Ion
N-({(1S)-6-(4-BROMOBENZYL)-1-CARBOXY-7,47-DIOXO-52-[(3AS,4S,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL]-10,13,16,19,22,25,28,31,34,37,40,43-DODECAOXA-6,46-DIAZADOPENTACONT-1-YL}CARBAMOYL)-L-GLUTAMIC ACID
5
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
24
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:377 , ASP A:387 , GLU A:425 , ASP A:453 , ZN A:817 , HOH A:1095
BINDING SITE FOR RESIDUE ZN A 816
02
AC2
SOFTWARE
ASP A:387 , GLU A:425 , HIS A:553 , ZN A:816 , J37 A:820 , HOH A:1095
BINDING SITE FOR RESIDUE ZN A 817
03
AC3
SOFTWARE
ASN A:451 , ASP A:453 , ARG A:534 , ARG A:536
BINDING SITE FOR RESIDUE CL A 818
04
AC4
SOFTWARE
THR A:269 , TYR A:272 , GLU A:433 , GLU A:436 , HOH A:903
BINDING SITE FOR RESIDUE CA A 819
05
AC5
SOFTWARE
ARG A:210 , ASN A:257 , ASP A:387 , GLU A:424 , GLU A:425 , GLY A:427 , LEU A:428 , GLU A:457 , ARG A:463 , ASP A:465 , GLY A:518 , ASN A:519 , ARG A:534 , ARG A:536 , TYR A:552 , HIS A:553 , LYS A:699 , TYR A:700 , ZN A:817 , HOH A:907 , HOH A:942 , HOH A:1051 , HOH A:1087 , HOH A:1095
BINDING SITE FOR RESIDUE J37 A 820
06
AC6
SOFTWARE
ASN A:76 , GLN A:95 , SER A:98 , HOH A:971
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 76 RESIDUES 801 TO 802
07
AC7
SOFTWARE
ASN A:121 , THR A:123 , HIS A:124 , THR A:349 , HOH A:1367
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 121 RESIDUES 803 TO 804
08
AC8
SOFTWARE
TYR A:127 , GLU A:137 , ILE A:138 , ASN A:140 , HOH A:1125
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 140 RESIDUES 805 TO 806
09
AC9
SOFTWARE
ASN A:195 , SER A:197 , HOH A:1350
BINDING SITE FOR MONO-SACCHARIDE NAG A 807 BOUND TO ASN A 195
10
BC1
SOFTWARE
TRP A:246 , ASN A:459 , PHE A:565 , TYR A:566 , HOH A:1012 , HOH A:1140 , HOH A:1312 , HOH A:1316
BINDING SITE FOR MONO-SACCHARIDE NAG A 808 BOUND TO ASN A 459
11
BC2
SOFTWARE
SER A:472 , ASN A:476 , PRO A:594 , HOH A:1154 , HOH A:1318
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 476 RESIDUES 809 TO 810
12
BC3
SOFTWARE
LEU A:110 , HIS A:112 , PHE A:235 , LYS A:240 , SER A:241 , GLU A:276 , TYR A:277 , ARG A:354 , SER A:631 , SER A:634 , ASN A:638 , GLN A:740 , HOH A:1104 , HOH A:1131 , HOH A:1314
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 638 RESIDUES 811 TO 815
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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CATH Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (136 KB)
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