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4NEA
Biol. Unit 1
Info
Asym.Unit (723 KB)
Biol.Unit 1 (708 KB)
Biol.Unit 2 (358 KB)
Biol.Unit 3 (358 KB)
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(1)
Title
:
1.90 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE (BETB) FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH NAD+ AND BME-FREE CYS289
Authors
:
A. S. Halavaty, G. Minasov, J. Winsor, I. Dubrovska, L. Shuvalova, W. F. Center For Structural Genomics Of Infectious Diseases (Csgi
Date
:
28 Oct 13 (Deposition) - 06 Nov 13 (Release) - 03 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,C (1x)
Biol. Unit 3: B,D (1x)
Keywords
:
Center For Structural Genomics Of Infectious Diseases, Csgid, Niaid, Rossmann Fold, Nad+, National Institute Of Allergy And Infectious Diseases, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Halavaty, R. L. Rich, C. Chen, J. C. Joo, G. Minasov, I. Dubrovska, J. R. Winsor, D. G. Myszka, M. Duban, L. Shuvalova, A. F. Yakunin, W. F. Anderson
Structural And Functional Analysis Of Betaine Aldehyde Dehydrogenase From Staphylococcus Aureus.
Acta Crystallogr. , Sect. D V. 71 1159 2015
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
1e: POTASSIUM ION (Ke)
1f: POTASSIUM ION (Kf)
1g: POTASSIUM ION (Kg)
1h: POTASSIUM ION (Kh)
1i: POTASSIUM ION (Ki)
1j: POTASSIUM ION (Kj)
1k: POTASSIUM ION (Kk)
1l: POTASSIUM ION (Kl)
1m: POTASSIUM ION (Km)
1n: POTASSIUM ION (Kn)
1o: POTASSIUM ION (Ko)
1p: POTASSIUM ION (Kp)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
-1
Ligand/Ion
POTASSIUM ION
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:153 , THR A:154 , PRO A:155 , TRP A:156 , ASN A:157 , LYS A:180 , SER A:182 , GLU A:183 , ALA A:212 , GLY A:213 , GLY A:217 , ASP A:218 , PHE A:231 , THR A:232 , GLY A:233 , GLY A:234 , THR A:237 , HIS A:240 , ILE A:241 , GLU A:255 , GLY A:257 , CYS A:289 , HIS A:336 , GLU A:390 , PHE A:392 , HOH A:627 , HOH A:631 , HOH A:811 , HOH A:812 , HOH A:843 , HOH A:960 , HOH A:1077 , HOH A:1117 , HOH A:1139
BINDING SITE FOR RESIDUE NAD A 501
02
AC2
SOFTWARE
ILE A:29 , ASP A:97 , ILE A:184 , HOH A:669 , HOH A:735
BINDING SITE FOR RESIDUE K A 502
03
AC3
SOFTWARE
LYS A:460 , GLY A:463 , HOH A:647 , VAL C:249 , ASN C:251 , HOH C:667
BINDING SITE FOR RESIDUE K A 503
04
AC4
SOFTWARE
VAL A:249 , ASN A:251 , HOH A:652 , LYS C:460 , GLY C:463 , HOH C:640
BINDING SITE FOR RESIDUE K A 504
05
AC5
SOFTWARE
GLU A:474 , LEU A:477 , HOH A:610 , HOH A:772 , HOH A:848
BINDING SITE FOR RESIDUE K A 505
06
AC6
SOFTWARE
LYS A:224 , VAL A:226 , ASN A:248 , THR A:250 , HOH A:715 , HOH A:1144
BINDING SITE FOR RESIDUE K A 506
07
AC7
SOFTWARE
ILE B:153 , THR B:154 , PRO B:155 , TRP B:156 , ASN B:157 , LYS B:180 , SER B:182 , GLU B:183 , GLY B:213 , SER B:214 , GLY B:217 , ASP B:218 , PHE B:231 , THR B:232 , GLY B:233 , GLY B:234 , THR B:237 , HIS B:240 , ILE B:241 , GLU B:255 , LEU B:256 , GLY B:257 , CYS B:289 , HIS B:336 , LYS B:339 , GLU B:390 , PHE B:392 , HOH B:613 , HOH B:812 , HOH B:843 , HOH B:890 , HOH B:917 , HOH B:955 , HOH B:1006 , HOH B:1090 , HOH B:1091
BINDING SITE FOR RESIDUE NAD B 501
08
AC8
SOFTWARE
LYS B:460 , GLY B:463 , HOH B:619 , VAL D:249 , ASN D:251 , HOH D:627
BINDING SITE FOR RESIDUE K B 502
09
AC9
SOFTWARE
ILE B:29 , ASP B:97 , ILE B:184 , HOH B:710 , HOH B:967
BINDING SITE FOR RESIDUE K B 503
10
BC1
SOFTWARE
VAL B:249 , ASN B:251 , HOH B:618 , LYS D:460 , GLY D:463 , HOH D:617
BINDING SITE FOR RESIDUE K B 504
11
BC2
SOFTWARE
GLU B:474 , LEU B:477 , HOH B:737 , HOH B:901 , HOH B:907
BINDING SITE FOR RESIDUE K B 505
12
BC3
SOFTWARE
LYS B:224 , VAL B:226 , ASN B:248 , THR B:250 , HOH B:611 , HOH B:785
BINDING SITE FOR RESIDUE K B 506
13
BC4
SOFTWARE
ILE C:153 , THR C:154 , PRO C:155 , TRP C:156 , ASN C:157 , LYS C:180 , PRO C:181 , SER C:182 , GLU C:183 , ALA C:212 , GLY C:213 , SER C:214 , GLY C:217 , ASP C:218 , PHE C:231 , THR C:232 , GLY C:233 , GLY C:234 , THR C:237 , HIS C:240 , ILE C:241 , GLU C:255 , LEU C:256 , GLY C:257 , CYS C:289 , HIS C:336 , LYS C:339 , GLU C:390 , PHE C:392 , HOH C:627 , HOH C:666 , HOH C:757 , HOH C:816 , HOH C:827 , HOH C:993
BINDING SITE FOR RESIDUE NAD C 501
14
BC5
SOFTWARE
ILE C:29 , ASP C:97 , ILE C:184 , HOH C:720
BINDING SITE FOR RESIDUE K C 502
15
BC6
SOFTWARE
LYS C:224 , VAL C:226 , ASN C:248 , THR C:250 , HOH C:712 , HOH C:741
BINDING SITE FOR RESIDUE K C 503
16
BC7
SOFTWARE
HOH A:1065 , GLU C:474 , LEU C:477 , HOH C:610 , HOH C:851
BINDING SITE FOR RESIDUE K C 504
17
BC8
SOFTWARE
ILE D:153 , THR D:154 , PRO D:155 , TRP D:156 , ASN D:157 , LYS D:180 , SER D:182 , GLU D:183 , ALA D:212 , GLY D:213 , SER D:214 , GLY D:217 , ASP D:218 , PHE D:231 , THR D:232 , GLY D:233 , GLY D:234 , THR D:237 , HIS D:240 , ILE D:241 , GLU D:255 , GLY D:257 , CYS D:289 , HIS D:336 , LYS D:339 , GLU D:390 , PHE D:392 , HOH D:618 , HOH D:702 , HOH D:805 , HOH D:891 , HOH D:896 , HOH D:931 , HOH D:990 , HOH D:994 , HOH D:1031
BINDING SITE FOR RESIDUE NAD D 501
18
BC9
SOFTWARE
LYS D:224 , VAL D:226 , ASN D:248 , THR D:250 , HOH D:603 , HOH D:656
BINDING SITE FOR RESIDUE K D 502
19
CC1
SOFTWARE
GLU D:474 , LEU D:477 , HOH D:615 , HOH D:870 , HOH D:1026
BINDING SITE FOR RESIDUE K D 503
20
CC2
SOFTWARE
ILE D:29 , ASP D:97 , ILE D:184 , HOH D:742
BINDING SITE FOR RESIDUE K D 504
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4neaa1 (A:0-496)
1b: SCOP_d4neac_ (C:)
1c: SCOP_d4nead_ (D:)
1d: SCOP_d4neab_ (B:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Staphylococcus aureus [TaxId: 93062]
(4)
1a
d4neaa1
A:0-496
1b
d4neac_
C:
1c
d4nead_
D:
1d
d4neab_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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