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4NDZ
Asym. Unit
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Asym.Unit (1.2 MB)
Biol.Unit 1 (567 KB)
Biol.Unit 2 (694 KB)
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(1)
Title
:
STRUCTURE OF MALTOSE BINDING PROTEIN FUSION TO 2-O-SULFOTRANSFERASE WITH BOUND HEPTASACCHARIDE AND PAP
Authors
:
C. Liu, J. Sheng, J. M. Krahn, L. Perera, Y. Xu, P. Hsieh, J. Liu, L. C. Pede
Date
:
28 Oct 13 (Deposition) - 19 Mar 14 (Release) - 19 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.45
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Heparan Sulfate, Fusion, Transport Protein-Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Liu, J. Sheng, J. M. Krahn, L. Perera, Y. Xu, P. Hsieh, J. Liu, L. C. Pedersen
Deciphering The Role Of 2-O-Sulfotransferase In Regulating Heparan Sulfate Biosynthesis
To Be Published
[
close entry info
]
Hetero Components
(7, 55)
Info
All Hetero Components
1a: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pa)
1b: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pb)
1c: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pc)
1d: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pd)
1e: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pe)
1f: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pf)
2a: BETA-D-GLUCOPYRANURONIC ACID (BDPa)
2b: BETA-D-GLUCOPYRANURONIC ACID (BDPb)
2c: BETA-D-GLUCOPYRANURONIC ACID (BDPc)
2d: BETA-D-GLUCOPYRANURONIC ACID (BDPd)
2e: BETA-D-GLUCOPYRANURONIC ACID (BDPe)
2f: BETA-D-GLUCOPYRANURONIC ACID (BDPf)
2g: BETA-D-GLUCOPYRANURONIC ACID (BDPg)
2h: BETA-D-GLUCOPYRANURONIC ACID (BDPh)
2i: BETA-D-GLUCOPYRANURONIC ACID (BDPi)
2j: BETA-D-GLUCOPYRANURONIC ACID (BDPj)
2k: BETA-D-GLUCOPYRANURONIC ACID (BDPk)
2l: BETA-D-GLUCOPYRANURONIC ACID (BDPl)
2m: BETA-D-GLUCOPYRANURONIC ACID (BDPm)
2n: BETA-D-GLUCOPYRANURONIC ACID (BDPn)
2o: BETA-D-GLUCOPYRANURONIC ACID (BDPo)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
3c: ALPHA-D-GLUCOSE (GLCc)
3d: ALPHA-D-GLUCOSE (GLCd)
3e: ALPHA-D-GLUCOSE (GLCe)
3f: ALPHA-D-GLUCOSE (GLCf)
3g: ALPHA-D-GLUCOSE (GLCg)
3h: ALPHA-D-GLUCOSE (GLCh)
3i: ALPHA-D-GLUCOSE (GLCi)
3j: ALPHA-D-GLUCOSE (GLCj)
4a: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSa)
4b: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSb)
4c: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSc)
4d: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSd)
4e: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSe)
4f: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSf)
4g: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSg)
4h: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSh)
4i: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSi)
4j: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSj)
5a: L-IDURONIC ACID (IDRa)
5b: L-IDURONIC ACID (IDRb)
5c: L-IDURONIC ACID (IDRc)
5d: L-IDURONIC ACID (IDRd)
5e: L-IDURONIC ACID (IDRe)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
6b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
6c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
6d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
6e: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGe)
7a: P-NITROPHENOL (NPOa)
7b: P-NITROPHENOL (NPOb)
7c: P-NITROPHENOL (NPOc)
7d: P-NITROPHENOL (NPOd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A3P
6
Ligand/Ion
ADENOSINE-3'-5'-DIPHOSPHATE
2
BDP
15
Ligand/Ion
BETA-D-GLUCOPYRANURONIC ACID
3
GLC
10
Ligand/Ion
ALPHA-D-GLUCOSE
4
GNS
10
Ligand/Ion
N-SULFO-ALPHA-D-GLUCOSAMINE
5
IDR
5
Ligand/Ion
L-IDURONIC ACID
6
NDG
5
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7
NPO
4
Ligand/Ion
P-NITROPHENOL
[
close Hetero Component info
]
Sites
(55, 55)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:1083 , THR A:1084 , ALA A:1085 , SER A:1086 , THR A:1087 , SER A:1088 , ARG A:1164 , SER A:1172 , THR A:1254 , TYR A:1279 , SER A:1285 , HIS A:1286 , LEU A:1287 , ARG A:1288 , LYS A:1289 , THR A:1290 , LYS A:1293
BINDING SITE FOR RESIDUE A3P A 2003
02
AC2
SOFTWARE
NDG A:2005
BINDING SITE FOR RESIDUE BDP A 2004
03
AC3
SOFTWARE
BDP A:2004 , BDP A:2006
BINDING SITE FOR RESIDUE NDG A 2005
04
AC4
SOFTWARE
NDG A:2005 , GNS A:2007 , GLU B:1349 , TYR B:1352
BINDING SITE FOR RESIDUE BDP A 2006
05
AC5
SOFTWARE
ARG A:1080 , THR A:1087 , ASN A:1091 , TYR A:1094 , HIS A:1106 , ARG A:1184 , BDP A:2006 , IDR A:2008 , GLU B:1349 , LYS B:1350
BINDING SITE FOR RESIDUE GNS A 2007
06
AC6
SOFTWARE
ARG A:1080 , HIS A:1142 , ARG A:1184 , LEU A:1187 , ARG A:1189 , ARG A:1288 , GNS A:2007 , GNS A:2009
BINDING SITE FOR RESIDUE IDR A 2008
07
AC7
SOFTWARE
PRO A:1082 , ARG A:1189 , ARG A:1190 , IDR A:2008 , BDP A:2010
BINDING SITE FOR RESIDUE GNS A 2009
08
AC8
SOFTWARE
TYR A:1173 , ARG A:1190 , GNS A:2009 , NPO A:2011
BINDING SITE FOR RESIDUE BDP A 2010
09
AC9
SOFTWARE
BDP A:2010 , GLU F:1334 , GLY F:1337 , LEU F:1339
BINDING SITE FOR RESIDUE NPO A 2011
10
BC1
SOFTWARE
GLU B:44 , TRP B:62 , ALA B:63 , ASP B:65 , ARG B:66 , GLU B:153 , PRO B:154 , TYR B:155 , TRP B:340 , ARG B:344 , GLC B:2002
BINDING SITE FOR RESIDUE GLC B 2001
11
BC2
SOFTWARE
ASN B:12 , ASP B:14 , LYS B:15 , ALA B:63 , GLU B:111 , GLC B:2001
BINDING SITE FOR RESIDUE GLC B 2002
12
BC3
SOFTWARE
LYS B:1083 , THR B:1084 , ALA B:1085 , SER B:1086 , THR B:1087 , SER B:1088 , ARG B:1164 , SER B:1172 , THR B:1254 , TYR B:1279 , SER B:1285 , HIS B:1286 , LEU B:1287 , ARG B:1288 , LYS B:1289 , THR B:1290 , LYS B:1293
BINDING SITE FOR RESIDUE A3P B 2003
13
BC4
SOFTWARE
NDG B:2005 , TYR C:1352 , LYS C:1354
BINDING SITE FOR RESIDUE BDP B 2004
14
BC5
SOFTWARE
BDP B:2004 , BDP B:2006
BINDING SITE FOR RESIDUE NDG B 2005
15
BC6
SOFTWARE
NDG B:2005 , GNS B:2007 , GLU C:1349 , TYR C:1352
BINDING SITE FOR RESIDUE BDP B 2006
16
BC7
SOFTWARE
ARG B:1080 , THR B:1087 , ASN B:1091 , TYR B:1094 , HIS B:1106 , HIS B:1140 , ARG B:1184 , BDP B:2006 , IDR B:2008 , GLU C:1349 , LYS C:1350
BINDING SITE FOR RESIDUE GNS B 2007
17
BC8
SOFTWARE
ARG B:1080 , HIS B:1142 , ARG B:1184 , LEU B:1187 , ARG B:1189 , ARG B:1288 , GNS B:2007 , GNS B:2009
BINDING SITE FOR RESIDUE IDR B 2008
18
BC9
SOFTWARE
PRO B:1082 , ARG B:1189 , ARG B:1190 , IDR B:2008 , BDP B:2010
BINDING SITE FOR RESIDUE GNS B 2009
19
CC1
SOFTWARE
LYS B:1111 , TYR B:1173 , ARG B:1190 , GNS B:2009 , NPO B:2011
BINDING SITE FOR RESIDUE BDP B 2010
20
CC2
SOFTWARE
TRP C:62 , ALA C:63 , ASP C:65 , ARG C:66 , GLU C:153 , PRO C:154 , TYR C:155 , TRP C:340 , ARG C:344 , GLC C:2002
BINDING SITE FOR RESIDUE GLC C 2001
21
CC3
SOFTWARE
ASN C:12 , ASP C:14 , LYS C:15 , ALA C:63 , GLU C:111 , GLC C:2001
BINDING SITE FOR RESIDUE GLC C 2002
22
CC4
SOFTWARE
LYS C:1083 , THR C:1084 , ALA C:1085 , SER C:1086 , THR C:1087 , SER C:1088 , ARG C:1164 , SER C:1172 , THR C:1254 , TYR C:1279 , SER C:1285 , HIS C:1286 , LEU C:1287 , ARG C:1288 , LYS C:1289 , THR C:1290 , LYS C:1293
BINDING SITE FOR RESIDUE A3P C 2003
23
CC5
SOFTWARE
BDP B:2010 , GLU D:1334 , GLY D:1337 , GLU D:1338 , LEU D:1339
BINDING SITE FOR RESIDUE NPO B 2011
24
CC6
SOFTWARE
TRP D:62 , ALA D:63 , ASP D:65 , ARG D:66 , GLU D:153 , PRO D:154 , TYR D:155 , ARG D:344 , GLC D:2002
BINDING SITE FOR RESIDUE GLC D 2001
25
CC7
SOFTWARE
ASN D:12 , ASP D:14 , LYS D:15 , ALA D:63 , GLU D:111 , GLC D:2001
BINDING SITE FOR RESIDUE GLC D 2002
26
CC8
SOFTWARE
LYS D:1083 , THR D:1084 , ALA D:1085 , SER D:1086 , THR D:1087 , SER D:1088 , ARG D:1164 , SER D:1172 , THR D:1254 , TYR D:1279 , SER D:1285 , HIS D:1286 , LEU D:1287 , ARG D:1288 , LYS D:1289 , THR D:1290 , LYS D:1293
BINDING SITE FOR RESIDUE A3P D 2003
27
CC9
SOFTWARE
NDG D:2005 , ALA E:1203 , LYS E:1303 , TYR E:1352 , LYS E:1354
BINDING SITE FOR RESIDUE BDP D 2004
28
DC1
SOFTWARE
BDP D:2004 , BDP D:2006
BINDING SITE FOR RESIDUE NDG D 2005
29
DC2
SOFTWARE
NDG D:2005 , GNS D:2007 , GLU E:1349 , TYR E:1352
BINDING SITE FOR RESIDUE BDP D 2006
30
DC3
SOFTWARE
ARG D:1080 , THR D:1087 , ASN D:1091 , TYR D:1094 , HIS D:1106 , HIS D:1140 , ARG D:1184 , BDP D:2006 , IDR D:2008 , GLU E:1349 , LYS E:1350
BINDING SITE FOR RESIDUE GNS D 2007
31
DC4
SOFTWARE
ARG D:1080 , HIS D:1142 , ARG D:1184 , LEU D:1187 , ARG D:1189 , ARG D:1288 , GNS D:2007 , GNS D:2009
BINDING SITE FOR RESIDUE IDR D 2008
32
DC5
SOFTWARE
PRO D:1082 , PHE D:1176 , ARG D:1189 , ARG D:1190 , IDR D:2008 , BDP D:2010
BINDING SITE FOR RESIDUE GNS D 2009
33
DC6
SOFTWARE
TYR D:1173 , LEU D:1177 , ARG D:1190 , GNS D:2009 , NPO D:2011
BINDING SITE FOR RESIDUE BDP D 2010
34
DC7
SOFTWARE
GLU A:1334 , ASP A:1336 , GLY A:1337 , GLU A:1338 , LEU A:1339 , ARG D:1190 , BDP D:2010
BINDING SITE FOR RESIDUE NPO D 2011
35
DC8
SOFTWARE
TRP E:62 , ALA E:63 , ASP E:65 , ARG E:66 , GLU E:153 , PRO E:154 , TYR E:155 , TRP E:340 , ARG E:344 , GLC E:2002
BINDING SITE FOR RESIDUE GLC E 2001
36
DC9
SOFTWARE
ASN E:12 , ASP E:14 , LYS E:15 , ALA E:63 , GLU E:111 , GLC E:2001
BINDING SITE FOR RESIDUE GLC E 2002
37
EC1
SOFTWARE
LYS E:1083 , THR E:1084 , ALA E:1085 , SER E:1086 , THR E:1087 , SER E:1088 , ARG E:1164 , SER E:1172 , THR E:1254 , TYR E:1279 , SER E:1285 , HIS E:1286 , LEU E:1287 , ARG E:1288 , LYS E:1289 , THR E:1290
BINDING SITE FOR RESIDUE A3P E 2003
38
EC2
SOFTWARE
NDG E:2005 , ASP F:358 , TYR F:1352
BINDING SITE FOR RESIDUE BDP E 2004
39
EC3
SOFTWARE
BDP E:2004 , BDP E:2006 , THR F:356
BINDING SITE FOR RESIDUE NDG E 2005
40
EC4
SOFTWARE
NDG E:2005 , GNS E:2007 , TYR F:1352
BINDING SITE FOR RESIDUE BDP E 2006
41
EC5
SOFTWARE
ARG E:1080 , THR E:1087 , ASN E:1091 , TYR E:1094 , HIS E:1106 , HIS E:1140 , BDP E:2006 , IDR E:2008 , GLU F:1349 , LYS F:1350
BINDING SITE FOR RESIDUE GNS E 2007
42
EC6
SOFTWARE
ARG E:1080 , HIS E:1142 , LEU E:1187 , ARG E:1288 , GNS E:2007 , GNS E:2009
BINDING SITE FOR RESIDUE IDR E 2008
43
EC7
SOFTWARE
PRO E:1082 , TYR E:1173 , PHE E:1176 , ARG E:1189 , ARG E:1190 , IDR E:2008 , BDP E:2010
BINDING SITE FOR RESIDUE GNS E 2009
44
EC8
SOFTWARE
TYR E:1173 , ARG E:1190 , GNS E:2009 , NPO E:2011
BINDING SITE FOR RESIDUE BDP E 2010
45
EC9
SOFTWARE
ALA A:1204 , LYS E:1111 , ASN E:1113 , BDP E:2010
BINDING SITE FOR RESIDUE NPO E 2011
46
FC1
SOFTWARE
TRP F:62 , ALA F:63 , ASP F:65 , ARG F:66 , GLU F:153 , PRO F:154 , TYR F:155 , TRP F:340 , ARG F:344 , GLC F:2002
BINDING SITE FOR RESIDUE GLC F 2001
47
FC2
SOFTWARE
ASN F:12 , ASP F:14 , LYS F:15 , ALA F:63 , GLU F:111 , GLC F:2001
BINDING SITE FOR RESIDUE GLC F 2002
48
FC3
SOFTWARE
LYS F:1083 , THR F:1084 , ALA F:1085 , SER F:1086 , THR F:1087 , SER F:1088 , ARG F:1164 , SER F:1172 , THR F:1254 , TYR F:1279 , SER F:1285 , HIS F:1286 , LEU F:1287 , ARG F:1288 , LYS F:1289 , THR F:1290 , LYS F:1293
BINDING SITE FOR RESIDUE A3P F 2003
49
FC4
SOFTWARE
LYS D:42 , TYR D:1352 , LYS D:1354 , NDG F:2005
BINDING SITE FOR RESIDUE BDP F 2004
50
FC5
SOFTWARE
TYR D:1352 , BDP F:2004 , BDP F:2006
BINDING SITE FOR RESIDUE NDG F 2005
51
FC6
SOFTWARE
TYR D:1352 , NDG F:2005 , GNS F:2007
BINDING SITE FOR RESIDUE BDP F 2006
52
FC7
SOFTWARE
GLU D:1349 , LYS D:1350 , ARG F:1080 , THR F:1087 , ASN F:1091 , TYR F:1094 , HIS F:1106 , HIS F:1140 , BDP F:2006 , IDR F:2008
BINDING SITE FOR RESIDUE GNS F 2007
53
FC8
SOFTWARE
ARG F:1080 , HIS F:1142 , LEU F:1187 , ARG F:1288 , GNS F:2007 , GNS F:2009
BINDING SITE FOR RESIDUE IDR F 2008
54
FC9
SOFTWARE
PRO F:1082 , TYR F:1173 , LEU F:1177 , ARG F:1190 , IDR F:2008 , BDP F:2010
BINDING SITE FOR RESIDUE GNS F 2009
55
GC1
SOFTWARE
LYS F:1111 , ASN F:1112 , TYR F:1173 , GNS F:2009
BINDING SITE FOR RESIDUE BDP F 2010
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